PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00013.1.g04870.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 304aa MW: 31996 Da PI: 8.0094

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00013.1.g04870.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.9	4.9e-05	157	202	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 a n+ r RR+r+ +++ L++l+ + +K + a++L +A YI+ L Zjn_sc00013.1.g04870.1.sm.mkhc 157 ATNKKPRVRRERLGERIIALQQLVSPF-----GKSDTATVLHEALGYIRFL 202 569999******************8.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.16E-5	147	207	No hit	No description
PROSITE profile	PS50888	11.998	153	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-12	154	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-8	156	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-4	159	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MVKEEEIITE AGGRGYMDMV SLGDEDFFQC LSPSSYFSSS VISTATTGAT PAASSPTCVS 60 YMDMAPYDHL LNFTGRQEQY DCHSNGPFCL QYNGADRATP VVVPQKSSPT TECSSSISMS 120 SSPSATSISA ISSTKPQALK KKGARCSDQR KAATASATNK KPRVRRERLG ERIIALQQLV 180 SPFGKSDTAT VLHEALGYIR FLHDQVQVLS SPYMQSLPAA AHATVHESAA GTVVEPPQRP 240 SDLRSRGLCL VPISFTDRVA GDGRCNGADL WSVAVPAVTK NVTAAAGSKG AAAALPGGHP 300 GHLA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466417.1	1e-110	transcription factor bHLH123 isoform X1
TrEMBL	C5X062	1e-109	C5X062_SORBI; Uncharacterized protein
STRING	Sb01g007440.1	1e-110	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8082	25	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	6e-33	bHLH family protein