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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zjn_sc00013.1.g04690.1.am.mk | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | LBD | ||||||||
| Protein Properties | Length: 243aa MW: 27319.3 Da PI: 10.156 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 118.5 | 3.9e-37 | 134 | 231 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81
+CaaCk+lrrkC++ Cv+apyfp ++++ fa vh++FGasnv+k+l+++p+ r da++sl+yeA+ar+rdPvyG+v+ il
Zjn_sc00013.1.g04690.1.am.mk 134 PCAACKLLRRKCTQVCVFAPYFPPDNAAMFASVHEVFGASNVSKILNDVPQALRGDAANSLAYEADARIRDPVYGCVAYIL 214
7******************************************************************************** PP
DUF260 82 klqqqleqlkaelallk 98
lq ++++ +a ++++
Zjn_sc00013.1.g04690.1.am.mk 215 ILQCKVKEISAGIDAAS 231
*******9998877665 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50891 | 23.886 | 133 | 234 | IPR004883 | Lateral organ boundaries, LOB |
| Pfam | PF03195 | 7.2E-38 | 134 | 228 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 243 aa Download sequence Send to blast |
MLLRWRCWDE HHNEQRQRWV WRHVQLSCTR PFSFRQQWRQ LIRGGWSRQA GGDLGLLRSR 60 GDLHPCLTRA SSSCLVILVM NSSSSGRHHE PFGRIPLLFP TNPSRARSGS PRAQPRYAPP 120 PRGDRRSMSS SISPCAACKL LRRKCTQVCV FAPYFPPDNA AMFASVHEVF GASNVSKILN 180 DVPQALRGDA ANSLAYEADA RIRDPVYGCV AYILILQCKV KEISAGIDAA SMELDHLASR 240 TSY |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5ly0_A | 2e-38 | 133 | 234 | 10 | 111 | LOB family transfactor Ramosa2.1 |
| 5ly0_B | 2e-38 | 133 | 234 | 10 | 111 | LOB family transfactor Ramosa2.1 |
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP29435 | 4 | 4 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G66870.1 | 1e-43 | ASYMMETRIC LEAVES 2-like 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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