PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g04680.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 300aa    MW: 31883.3 Da    PI: 7.9242
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g04680.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.72.3e-39441431100
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                                   +CaaCk+lrrkC+++Cv+apyfp ++p+kfa vh++FGasnv+k+l+++p+  r da++sl+yeA+ar+rdPvyG+v+ il
  Zjn_sc00013.1.g04680.1.am.mk  44 PCAACKMLRRKCTQGCVFAPYFPPDDPAKFASVHQVFGASNVSKILNDVPQPLRGDAANSLAYEADARIRDPVYGCVAYIL 124
                                   7******************************************************************************** PP

                        DUF260  82 klqqqleqlkaelallkee 100
                                    l+ ++e+ +a+++++++e
  Zjn_sc00013.1.g04680.1.am.mk 125 ILECKVEEIRADIVAARKE 143
                                   *************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.97243144IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-3944141IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
LFPIPTTLTV PGPEHIAAQH RSEHPAPIRG ATPKGRSMSS PSSPCAACKM LRRKCTQGCV  60
FAPYFPPDDP AKFASVHQVF GASNVSKILN DVPQPLRGDA ANSLAYEADA RIRDPVYGCV  120
AYILILECKV EEIRADIVAA RKELAVYIGP AAFGPLAAAP RYHHPAAAQY AGVHPHHLDQ  180
QMMRHRQQKM AEARRRAATV DVVTVQGVMM GQATFYAHAA QGSSLVGPMV AAVPHDAGAP  240
YDGGFVLQPQ PASHARTAVA LPLTYQMESP LPSSPGNSPP EVVLRQQHTD GSDEGSGGDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-404314710114LOB family transfactor Ramosa2.1
5ly0_B1e-404314710114LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794967.15e-77protein ASYMMETRIC LEAVES 2-like
TrEMBLA0A1E5VYJ49e-81A0A1E5VYJ4_9POAL; LOB domain-containing protein 36
STRINGSi036905m5e-76(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61433456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.13e-40ASYMMETRIC LEAVES 2-like 1