PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g01680.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 645aa    MW: 68407.9 Da    PI: 4.7899
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g01680.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS462.52.4e-1412646411374
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   lv++Ll+cAeav+++++++a+al++++  las++g +m+++aayf eALa+r++r        ++p ++s  +  ++++a+
  Zjn_sc00013.1.g01680.1.am.mk 264 LVHALLACAEAVQQENFSAAEALVKQIPMLASSQGGAMRKVAAYFGEALARRVYR--------FRPAADS--SLLDAAFAD 334
                                   689****************************************************........3333333..344444444 PP

                          GRAS  82 kl...fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeele 159
                                    l   f+e +P+lkf+h+taNqaIlea++g++rvH++Df+i+qG+QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+
  Zjn_sc00013.1.g01680.1.am.mk 335 LLhahFYESCPYLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQ 415
                                   33445**************************************************************************** PP

                          GRAS 160 etgerLakfAeelgvpfefnvlvakrledleleeLrvkp......gEalaVnlvlqlhrlldesvsleserdevLklvksl 234
                                   ++g++La+fA++++v+f+++ lva +l+dle+ +L+ +        E++aVn+v+++hrll+++++le+    vL +v+ +
  Zjn_sc00013.1.g01680.1.am.mk 416 QVGWKLAQFAHTINVDFQYRGLVAATLADLEPFMLQPEGeekddePEVIAVNSVFEMHRLLAQPGALEK----VLGTVRAV 492
                                   ***********************************54444455679***********************....******** PP

                          GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleak.......lpres.eerikvErellgreivnvvacegaerre 307
                                   +Pk+v+vveqea+hns+sFl+rf+++l+yys++fdsle +        p+++  +++++++++lgr+i+nvvacegaer e
  Zjn_sc00013.1.g01680.1.am.mk 493 RPKIVTVVEQEANHNSGSFLDRFTQSLHYYSTMFDSLEGGgsgqsdaSPAAAaGTDQVMSEVYLGRQICNVVACEGAERME 573
                                   *************************************888667666533333699************************** PP

                          GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   rhetle+Wr r+++aGF+p++l+++a+ qa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaWr
  Zjn_sc00013.1.g01680.1.am.mk 574 RHETLEQWRGRFGRAGFEPLHLGSNAYRQASTLLALFAgGDGYRVEEKDGCLTLGWHTRPLIATSAWR 641
                                   *******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011296.7E-3368148No hitNo description
PfamPF120412.4E-3668142IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098567.736238620IPR005202Transcription factor GRAS
PfamPF035148.5E-139264641IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MGHKVSSTER KRIRLAIGLR DGEVASPEIT KREYQEAGGS SGGGSSDLGS FEDKMMVVPA  60
AEQDEEVDEL LAALGYKVRS SDMADVAQKL EQLEMAMGMG GVTGAAADDG FVSHLATDTV  120
HYNPSDLSSW VESMLSELNA PPQPLPPAPV PPTPLLASAS STVPSVGGGG YFDPPPPVDS  180
SSSTYALKPI PSPVAAPADP STDSAPEPKR MRTGGDSASS SSSSSSSLGG GGARISVVEA  240
APPASNAPAV PVVMVDTQEA GIRLVHALLA CAEAVQQENF SAAEALVKQI PMLASSQGGA  300
MRKVAAYFGE ALARRVYRFR PAADSSLLDA AFADLLHAHF YESCPYLKFA HFTANQAILE  360
AFAGCRRVHV VDFGIKQGMQ WPALLQALAL RPGGPPSFRL TGVGPPQPDE TDALQQVGWK  420
LAQFAHTINV DFQYRGLVAA TLADLEPFML QPEGEEKDDE PEVIAVNSVF EMHRLLAQPG  480
ALEKVLGTVR AVRPKIVTVV EQEANHNSGS FLDRFTQSLH YYSTMFDSLE GGGSGQSDAS  540
PAAAAGTDQV MSEVYLGRQI CNVVACEGAE RMERHETLEQ WRGRFGRAGF EPLHLGSNAY  600
RQASTLLALF AGGDGYRVEE KDGCLTLGWH TRPLIATSAW RLTAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6127164025377Protein SCARECROW
5b3h_D2e-6127164025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN7992730.0JN799273.1 Eragrostis tef bio-material 494365 reduced height-2 (rht1-2) gene, complete cds.
GenBankJN7992740.0JN799274.1 Eragrostis tef bio-material 494324 reduced height-2 (rht1-2) gene, complete cds.
GenBankJN7992750.0JN799275.1 Eragrostis tef bio-material 494487 reduced height-2 (rht1-2) gene, complete cds.
GenBankJN7992760.0JN799276.1 Eragrostis tef bio-material 524435 reduced height-2 (rht1-2) gene, complete cds.
GenBankJN7992770.0JN799277.1 Eragrostis tef bio-material 358595 reduced height-2 (rht1-2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354393.10.0DELLA protein DWARF8
SwissprotQ9ST480.0DWRF8_MAIZE; DELLA protein DWARF8
TrEMBLH9A2920.0H9A292_ERATE; Reduced height-2
STRINGGRMZM2G144744_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]