PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g07050.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 526aa    MW: 55873.5 Da    PI: 6.5106
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g07050.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.89.3e-33210267260
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                   dDgynWrKYGqK++kgse+prsYY+C++++Cp+kkkvers  d++v+ei+Y+g+Hnh+k
  Zjn_sc00012.1.g07050.1.sm.mk 210 DDGYNWRKYGQKQMKGSENPRSYYKCSFPDCPTKKKVERSP-DGQVTEIVYKGTHNHPK 267
                                   8****************************************.***************85 PP
2WRKY993e-31374432159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK+vkg+++prsYY+Ct agCpv+k+ver+ +d ++v++tY  +Hnh+
  Zjn_sc00012.1.g07050.1.sm.mk 374 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAAGCPVRKHVERACHDARAVITTYVAKHNHD 432
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-28201268IPR003657WRKY domain
SuperFamilySSF1182905.89E-25206268IPR003657WRKY domain
SMARTSM007746.8E-35209267IPR003657WRKY domain
PROSITE profilePS5081123.112210268IPR003657WRKY domain
PfamPF031063.4E-25210266IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.8E-35359434IPR003657WRKY domain
SuperFamilySSF1182903.66E-28366434IPR003657WRKY domain
PROSITE profilePS5081137.275369434IPR003657WRKY domain
SMARTSM007741.5E-34374433IPR003657WRKY domain
PfamPF031067.2E-24375432IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MTSAPASLGA AVANSGPVAL SFASNSFGGG SSFLAGGSRF KNMAPASLLP ASPSSRFNAA  60
AAGGFLDSPI LLTPSLFPSP TTGAFPSEPF NWMGPPAENL PEVVKEEKRQ CFDFTFQTTA  120
AVPVTTTGAA QAESFSQSSM TMAPLGGEGD SYNGEPWSFQ QERAMDFNAP FEAPSSGVTT  180
AATQPADMLG NSGYNAPPCF REQQSRRSSD DGYNWRKYGQ KQMKGSENPR SYYKCSFPDC  240
PTKKKVERSP DGQVTEIVYK GTHNHPKPQG TRRGAASAAS YVLGSANDEH SFGALSGTPV  300
ATPENSSGSF GDDEINGVSS RLIGTDQLLH ADDEPDSKKC RRDGSEGEAL SVAGNRTVRE  360
PRVVVQTLSD IDVLDDGYRW RKYGQKVVKG NPNPRSYYKC TAAGCPVRKH VERACHDARA  420
VITTYVAKHN HDVPPARGSY RAGLTALQPA ASYHQGAGVF GGASSHGAPM QAAESGGFAV  480
SGFGNTMGAS YPYTTSQQCD ATYYTSGTKD EPRDDDLSFF EQQLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-33210434877Probable WRKY transcription factor 4
2lex_A9e-33210434877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2981842e-98DQ298184.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 70 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961763.10.0WRKY transcription factor WRKY24
SwissprotQ6IEQ71e-140WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A1E5UYK50.0A0A1E5UYK5_9POAL; Putative WRKY transcription factor 33
STRINGSi021634m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.17e-94WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]