PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g06380.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 162aa    MW: 17117.6 Da    PI: 8.796
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g06380.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000151941123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C+ Cg++F++   L  H  +H
  Zjn_sc00012.1.g06380.1.am.mk 19 FECKTCGRRFPTFQALGGHRASH 41
                                  89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.82E-91789No hitNo description
SMARTSM003550.111941IPR015880Zinc finger, C2H2-like
PfamPF139127.6E-131943IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0531946IPR007087Zinc finger, C2H2
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
PfamPF139126.5E-106691IPR007087Zinc finger, C2H2
SMARTSM003550.746789IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.646794IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MMENELLLQR QQRGGGRLFE CKTCGRRFPT FQALGGHRAS HRRPGPYGFV TGIRKLEAAC  60
AGGPRVHGCP ICGAEFAVGQ ALGGHMRRHR GAAASAGTQA EICSSGDTAS ATVENRGEDC  120
VRGICLELNL ALPASCAKCQ KDAGLGSKVQ GVQKNFVFDC IL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805950.12e-52zinc finger protein ZAT12-like
TrEMBLA0A1E5USH43e-53A0A1E5USH4_9POAL; Uncharacterized protein
STRINGPavir.J32634.1.p4e-49(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.11e-25C2H2 family protein