PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00012.1.g05570.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 383aa MW: 42371.4 Da PI: 7.9768

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00012.1.g05570.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	205	224	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C+ C+k+F+r n++ H+ Zjn_sc00012.1.g05570.1.am.mk 205 FICHVCSKTFNRYNNMQMHM 224 89*****************9 PP
2	zf-C2H2	12.2	0.00054	292	314	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk+F k + ++H +++ Zjn_sc00012.1.g05570.1.am.mk 292 FGCRRCGKPFAVKGDWRTHEKNC 314 56*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.66E-5	196	228	No hit	No description
PROSITE profile	PS50157	10.138	205	232	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.1E-4	205	224	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	207	227	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MESAAGFGVQ FFELLKPSSS PPSSFSSLTT SSSLSTPSID RSVGGSNGGL DTSLCLPLLD 60 RLEERATSPE SDHGRNGNHH IKQELLSNDT TAPNGRSEEA DVELNIGLPA IGGYSSSEDA 120 PMDEEDEEEN TEDSEEDEKP IRQRDEKCKA EGGDDQRARI EMVEGSSDCL RVGGEASMIK 180 GIFTSRGRRF WIPTPAQILV GPVQFICHVC SKTFNRYNNM QMHMWGHGRE YRKGPESLKQ 240 GTQAATVALL KLPCYCCSPG CRNNVSHPRA RPLKDFRTLQ THYKRKHGAK HFGCRRCGKP 300 FAVKGDWRTH EKNCGKRWFC ACGSDFKHKR SLNDHVRSFG GGHLPVAPDH QQVPAAAAVP 360 PQPSRQRIIR FDQAAAPWNR NLA

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MESAAGFGVQ FFELLKPSSS PPSSFSSLTT SSSLSTPSID RSVGGSNGGL DTSLCLPLLD  60
RLEERATSPE SDHGRNGNHH IKQELLSNDT TAPNGRSEEA DVELNIGLPA IGGYSSSEDA  120
PMDEEDEEEN TEDSEEDEKP IRQRDEKCKA EGGDDQRARI EMVEGSSDCL RVGGEASMIK  180
GIFTSRGRRF WIPTPAQILV GPVQFICHVC SKTFNRYNNM QMHMWGHGRE YRKGPESLKQ  240
GTQAATVALL KLPCYCCSPG CRNNVSHPRA RPLKDFRTLQ THYKRKHGAK HFGCRRCGKP  300
FAVKGDWRTH EKNCGKRWFC ACGSDFKHKR SLNDHVRSFG GGHLPVAPDH QQVPAAAAVP  360
PQPSRQRIIR FDQAAAPWNR NLA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK359222	1e-165	AK359222.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1092D14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961925.1	1e-159	protein TRANSPARENT TESTA 1
Swissprot	Q8W030	3e-94	ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBL	K3Z6X6	1e-158	K3Z6X6_SETIT; Uncharacterized protein
STRING	Si022296m	1e-158	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4472	36	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51220.1	2e-91	WIP domain protein 5

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]