PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g00930.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 451aa    MW: 48307.1 Da    PI: 6.7906
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g00930.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.82.1e-93804051332
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 
                                   lv++L++cA a+++gd + aq+ L   + +  a ++++ + R+a +f+ AL++rl+   ++ +   pp +      ++   
  Zjn_sc00012.1.g00930.1.sm.mk  80 LVHVLVTCAGAIQAGDYSTAQSNLRDAHSIlaAISTATGIGRVAEHFAAALSQRLFPAYPHSA---PPPPP----PATPGE 153
                                   689***********************999985556669******************9444433...22222....234455 PP

                          GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeelee 160
                                    ++ f+e+ P+lkf++ taN aIl+a+eg++rvH++D+ ++qGlQWp L++aL++R++gpp lRiTg+g+  +g+++el+e
  Zjn_sc00012.1.g00930.1.sm.mk 154 LQHQFYEAGPYLKFAYSTANMAILDAFEGCDRVHVVDLALMQGLQWPELIHALSKRRGGPPYLRITGIGPTPTGNRDELHE 234
                                   6677******************************************************************8888******* PP

                          GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkv 238
                                    g rLa++A++l+vpf+f+ + a++l+ l++++L++ pgE++aVn++lqlhrll ++ + +    ++d++L+ +++++P+v
  Zjn_sc00012.1.g00930.1.sm.mk 235 AGLRLAELARSLNVPFSFRRVCADQLDGLRPWMLNIVPGEVVAVNSILQLHRLLVDPDADPTvpaPIDTLLDWLRGVRPHV 315
                                   *****************************************************96655444444499************** PP

                          GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319
                                   ++vveqeadhn++s+l+rf++al +y+a+fds+ea           + +++l+ ei +vv+ eg++r+erhe +++Wr+rl
  Zjn_sc00012.1.g00930.1.sm.mk 316 FTVVEQEADHNKPSLLDRFTNALFHYAAMFDSMEAA----GGSGGALAEAYLRAEIFDVVCGEGSARTERHELASRWRARL 392
                                   *********************************998....56677788888****************************** PP

                          GRAS 320 eeaGFkpvplsek 332
                                    +aG++ +p ++ 
  Zjn_sc00012.1.g00930.1.sm.mk 393 ARAGLTRLPARSC 405
                                   *****99988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.65454427IPR005202Transcription factor GRAS
PfamPF035147.1E-9180405IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MGSFTFGWPP MDPASFAALT GAVPLPSPSA TTNGAVYCVN PGLYASVQPH MLVQPAAPAA  60
APEADAARRQ QAEEAAAIRL VHVLVTCAGA IQAGDYSTAQ SNLRDAHSIL AAISTATGIG  120
RVAEHFAAAL SQRLFPAYPH SAPPPPPPAT PGELQHQFYE AGPYLKFAYS TANMAILDAF  180
EGCDRVHVVD LALMQGLQWP ELIHALSKRR GGPPYLRITG IGPTPTGNRD ELHEAGLRLA  240
ELARSLNVPF SFRRVCADQL DGLRPWMLNI VPGEVVAVNS ILQLHRLLVD PDADPTVPAP  300
IDTLLDWLRG VRPHVFTVVE QEADHNKPSL LDRFTNALFH YAAMFDSMEA AGGSGGALAE  360
AYLRAEIFDV VCGEGSARTE RHELASRWRA RLARAGLTRL PARSCAPEAG LIARRVPRAR  420
ARGSGGGDDF ERRMMAHIYN AAVTPELPCA A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-39624172349Protein SCARECROW
5b3h_D2e-39624172349Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963578.11e-174DELLA protein DWARF8
TrEMBLA0A3L6SWQ51e-176A0A3L6SWQ5_PANMI; DELLA protein DWARF8-like
STRINGSi024429m1e-173(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.14e-69GRAS family protein