PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g00780.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 386aa    MW: 42572 Da    PI: 9.3923
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g00780.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer941.3e-29179229358
                   ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                                   +vrY+eCl+NhAa+lGgh+vDGCgEfmp      + +alkCaACgCHR+FHR++  
  Zjn_sc00012.1.g00780.1.am.mk 179 AVRYNECLRNHAAALGGHVVDGCGEFMPG-----DDDALKCAACGCHRSFHRKDDG 229
                                   79**************************7.....568****************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.0E-24180227IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.4E-25181227IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.626182227IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-15182227IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.604.4E-29300372IPR009057Homeodomain-like
SuperFamilySSF466895.02E-19301372IPR009057Homeodomain-like
PROSITE profilePS500718.714309373IPR001356Homeobox domain
TIGRFAMsTIGR015653.1E-25311368IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MVLWWHPTSS RQGGPWEEDE ESKGRGSPSE ENEETSLRLK MAGSHRNSIQ GPQKKVLASG  60
STAMKPQPLA MLGPRCGHRR GEPCQLSVAA PTASPVYHTA PPRVECECRR FPCKGKAESP  120
LLSRRRSPTT TRHALMEFTT TRGQEQEPIH AMGASSTPPL AHSAVPRAPP SSSSSSPSAV  180
RYNECLRNHA AALGGHVVDG CGEFMPGDDD ALKCAACGCH RSFHRKDDGQ QQPRHHLLLP  240
EPAPAPPVTL TAPRVPLLMP PPPHASSYPP YAPFAYHGTP SASGGTTTES SSEELAPPSA  300
QGQHQQQPAR RKRFRTKFTP EQKELMLAFA ERLGWRMQKQ DEALVEQFCA QAGVRRRVFK  360
VWMHNNKQIS RRQTQQEQQS QQQLEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-263123681874ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961117.14e-82zinc-finger homeodomain protein 6-like
SwissprotB8AX531e-79ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBLA0A368QET79e-81A0A368QET7_SETIT; Uncharacterized protein
STRINGPavir.Ca01004.1.p9e-79(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.19e-26homeobox protein 22