PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00011.1.g06470.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 175aa MW: 18780.2 Da PI: 5.9254

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00011.1.g06470.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.7e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Zjn_sc00011.1.g06470.1.am.mk 68 FVCTYCDRKFCSSQALGGHQNAH 90 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.54E-7	63	111	No hit	No description
PROSITE profile	PS50157	11.032	68	95	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	70	90	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MSDSFDATSA NERHCSMAAR ALEFALQPSA VQEQVGMCDT ASAIMEEEEL NLELTLLHRS 60 PAEPFGFFVC TYCDRKFCSS QALGGHQNAH KYERSLAKRR REIAAAMRAH APAAATGNLD 120 AGVVVAAAGN QRVRSDAKQH AAVAPLPALL MTSNKEMPSE SSIDCGDGLD LSLRL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU963282	1e-40	EU963282.1 Zea mays clone 260368 hypothetical protein mRNA, complete cds.
GenBank	EU972402	1e-40	EU972402.1 Zea mays clone 380740 zinc finger protein 3 mRNA, complete cds.
GenBank	EU973130	1e-40	EU973130.1 Zea mays clone 393764 zinc finger protein 3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004980326.1	8e-37	zinc finger protein 2
TrEMBL	A0A0A9HWN6	7e-46	A0A0A9HWN6_ARUDO; Uncharacterized protein
STRING	Si028062m	3e-36	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	8e-11	zinc-finger protein 1