PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00011.1.g02130.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 495aa    MW: 54381.2 Da    PI: 10.5239
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00011.1.g02130.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF732.5e-23172221150
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                                   kri+n+++rq tf kRr g++KKA ELSvLCd++ ++++fs +gkly y 
  Zjn_sc00011.1.g02130.1.am.mk 172 KRIDNTTQRQSTFYKRRDGLFKKARELSVLCDVDLLLLLFSASGKLYQYL 221
                                   79**********************************************96 PP
2K-box18.58.2e-082623401694
                         K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                                   + + el+++ +    L+re+R +  +d e+ ++  L+ Le++Le ++ k+R  K++ +  +i++lq+  k  qee   L
  Zjn_sc00011.1.g02130.1.am.mk 262 ERRAELDQVGQMCALLERELRFMTLQDGEQYTVPSLELLEHNLEAAMYKVRCEKDRKIGGEISYLQNIIKGRQEERYGL 340
                                   56789999999999****************************************************9988888887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.399164224IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-32164223IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-27165251IPR002100Transcription factor, MADS-box
PROSITE patternPS003500166220IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-22166186IPR002100Transcription factor, MADS-box
PfamPF003192.1E-21173220IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-22186201IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-22201222IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.458260351IPR002487Transcription factor, K-box
PfamPF014862.6E-10261343IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MLGCGSLANG LRRPLLLSAR ILQDPTERRP GQGVLVPSAF SALTGRFGSA IHWRRHVAVG  60
SRASRRQKQP SQSSQPCSLL HKRPINRQHA PPDTKKSYTM PRACSSLDGH VLAKLRALFK  120
ARASKQRAPF SLARPPPSPS AVTSRKLSSR CRADARACGV GNKMGRGRSE IKRIDNTTQR  180
QSTFYKRRDG LFKKARELSV LCDVDLLLLL FSASGKLYQY LSPTVPSVKE LVERYEAATH  240
TKVWTDIQQT FWWLTEDGCG QERRAELDQV GQMCALLERE LRFMTLQDGE QYTVPSLELL  300
EHNLEAAMYK VRCEKDRKIG GEISYLQNII KGRQEERYGL CDKTLKDGEG GSSSEISGLD  360
LKLATAPLPP RSRTSAAEGK YASVQVRNGS GIVQSAAVPR VHNLLLRCRL QHPTTSETVS  420
AAIDASTCGV AAHPARTLSV RTGSPASKVP SDKRGKPAIE QSTCSTEEID PFVRNGFARL  480
ASVAAEPRLG LSTSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-14164251188MEF2 CHIMERA
6byy_B3e-14164251188MEF2 CHIMERA
6byy_C3e-14164251188MEF2 CHIMERA
6byy_D3e-14164251188MEF2 CHIMERA
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119233439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-20AGAMOUS-like 8