PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00010.1.g02020.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 497aa    MW: 53202.2 Da    PI: 7.6232
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00010.1.g02020.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014358380123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+Cp Cg+ F +   L  H  +H
  Zjn_sc00010.1.g02020.1.am.mk 358 YECPGCGRAFQSYQALGGHRASH 380
                                   99********9999888888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.6E-6128151IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.0E-4129152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.08E-7129151No hitNo description
PROSITE profilePS5015710.284129152IPR007087Zinc finger, C2H2
SMARTSM003550.053129151IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280131151IPR007087Zinc finger, C2H2
SuperFamilySSF576671.08E-7353380No hitNo description
PfamPF139121.0E-10357382IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492358385IPR007087Zinc finger, C2H2
SMARTSM003550.21358380IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280360380IPR007087Zinc finger, C2H2
PfamPF139124.9E-11437460IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889437460IPR007087Zinc finger, C2H2
SMARTSM003550.15437459IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280439459IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MAIHWKASYL CCRAELFNAG WKDGSGNAAH IVGCAADGAR PRESGAVEWT RLHSAADGAG  60
RRESRQGEAG ARLRWRRRAQ GSGGARDESQ CTGKADKSPL EQVLLAAALA DRASQHAVVL  120
VLGISSARHT CKVCGKGFPC GRSLGGHMRS HSLAEVAMAE AVADAGADDA DAYINGVMES  180
GYGLRENPKK TRRLSSEFDR GGEDECRNHS GEVFSSGKTV SEDVRRHASA GGNFADGEHE  240
DEAGPDVVEP ERKLITTEAA VPFPEPRRRR RSMRVPAPAP PPATFDKEPV DVARCLIMLS  300
RHTPSRWATD GCGARNGYYH DAESDDTSAF QYDEVEITNI KKRKPAACLG GDEKRGRYEC  360
PGCGRAFQSY QALGGHRASH KRINSSCCTT KVTLYQSEPN VEANTSFSMS STPASPEAED  420
GAAAAVAVNA RKISSKFECP ICFKVFGSGQ ALGGHKRSHS IAGELYERAG AGKFEPEQPL  480
VAARFLDLNL PAPGAED
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792036.11e-113zinc finger protein ZAT4-like
TrEMBLA0A3L6TTF01e-114A0A3L6TTF0_PANMI; Zinc finger protein ZAT4-like
STRINGPavir.Ia03028.1.p1e-112(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.19e-24C2H2-like zinc finger protein