PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00010.1.g01550.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 710aa    MW: 78962.5 Da    PI: 5.2832
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00010.1.g01550.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-16419466148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg+WT+ Ed++lv +++++G g+W t +++ g++R++k+c++rw++yl
  Zjn_sc00010.1.g01550.1.am.mk 419 RGAWTAMEDDILVSYIRKHGEGRWGTLPSRAGLKRCGKSCRLRWLNYL 466
                                   89********************************************97 PP
2Myb_DNA-binding43.28.8e-14472540147
                                   TSSS-HHHHHHHHHHHHHTTTT.......................-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.......................tWktIartmgkgRtlkqcksrwqky 47 
                                   rg+ + +E+el+++++++lG++                       +W++Ia +++ gRt++++k++w++ 
  Zjn_sc00010.1.g01550.1.am.mk 472 RGNISNDEEELIIRLHRLLGNRrsricwqcsvssesslggdepviRWSLIAGRLP-GRTDNEIKNYWNTT 540
                                   78899**************************************************.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF040918.5E-7247294IPR007225Exocyst complex subunit Sec15-like
PfamPF040912.3E-14296375IPR007225Exocyst complex subunit Sec15-like
Gene3DG3DSA:1.10.10.601.9E-21410469IPR009057Homeodomain-like
PROSITE profilePS5129421.651414470IPR017930Myb domain
SMARTSM007171.3E-13418468IPR001005SANT/Myb domain
PfamPF002491.7E-14419466IPR001005SANT/Myb domain
SuperFamilySSF466891.99E-20419470IPR009057Homeodomain-like
CDDcd001677.74E-10421466No hitNo description
Gene3DG3DSA:1.10.10.602.7E-19470544IPR009057Homeodomain-like
SMARTSM007171.0E-11471543IPR001005SANT/Myb domain
PROSITE profilePS5129410.562471545IPR017930Myb domain
PfamPF002494.2E-11472540IPR001005SANT/Myb domain
CDDcd001676.49E-8476541No hitNo description
SuperFamilySSF466891.99E-20513540IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006904Biological Processvesicle docking involved in exocytosis
GO:0000145Cellular Componentexocyst
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MTAQPKKRSA IVESGDGGLG VGIATFIANG EDLGPIIRHS FESGKPEALM HGLRSIVKKK  60
EVEIEELCRL HYEDFILAVD ELRGVLVDAE ELKSMLSGEN SHLQEVSTGQ LLKLDELYEL  120
YSVKKNVGEA VTTLKICVKV ISLYGLLSES QVETTWETAL ARVTSTLEEQ LSRMRVASHF  180
LVIKDYVTLL GATVRKYGYP ITQLIEVLEK SRDKYHQLLL LERRKQIDET LTNDSYEQMI  240
IKKEDDYNMN VTALGLEPDD AIPNFPYVAP FSSSVPDVCR IVRSFVEDSV NYLSYGVLGL  300
DIDLKMLEAF ADEKFETTGL SISGKETSFR DCLVEIRQLI NLLLSSQPEN FMNPVIRQRN  360
YGSLDYKKLA IICDKYKDAA DGIFGSLSNR NAKQSARKRK GEAPEMGRKP CCSKEGLNRG  420
AWTAMEDDIL VSYIRKHGEG RWGTLPSRAG LKRCGKSCRL RWLNYLRPGI KRGNISNDEE  480
ELIIRLHRLL GNRRSRICWQ CSVSSESSLG GDEPVIRWSL IAGRLPGRTD NEIKNYWNTT  540
LGKKARRESS TRSKQQHQAN AARTSSGPAR TASGAAPDAT AIGWPSPEPN TSPVRTKALR  600
CTARLPVPPR AVAQASRGSP PEEVEAGDDH VQDAVEAAAP AAEEQQDCLP EDDLSIDLDF  660
DLGDLAFLSP WRDEAADGMV RPDDRFVGGE SDMEALLLGP AGDDLEFSWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-2041754425127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion. Involved in polarized cell growth and organ morphogenesis. During cytokinesis, involved in cell plate initiation, cell plate maturation and formation of new primary cell wall. {ECO:0000269|PubMed:20870962}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankD886191e-78D88619.1 Oryza sativa mRNA for OSMYB3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotF4JHH53e-52SC15B_ARATH; Exocyst complex component SEC15B
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.19e-45MYB family protein
Publications ? help Back to Top
  1. Marmagne A, et al.
    A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome.
    Mol. Cell Proteomics, 2007. 6(11): p. 1980-96
    [PMID:17644812]
  2. Hála M, et al.
    An exocyst complex functions in plant cell growth in Arabidopsis and tobacco.
    Plant Cell, 2008. 20(5): p. 1330-45
    [PMID:18492870]
  3. Chong YT, et al.
    Characterization of the Arabidopsis thaliana exocyst complex gene families by phylogenetic, expression profiling, and subcellular localization studies.
    New Phytol., 2010. 185(2): p. 401-19
    [PMID:19895414]
  4. Fendrych M, et al.
    The Arabidopsis exocyst complex is involved in cytokinesis and cell plate maturation.
    Plant Cell, 2010. 22(9): p. 3053-65
    [PMID:20870962]
  5. Pecenková T, et al.
    The role for the exocyst complex subunits Exo70B2 and Exo70H1 in the plant-pathogen interaction.
    J. Exp. Bot., 2011. 62(6): p. 2107-16
    [PMID:21199889]
  6. Ding Y, et al.
    Exo70E2 is essential for exocyst subunit recruitment and EXPO formation in both plants and animals.
    Mol. Biol. Cell, 2014. 25(3): p. 412-26
    [PMID:24307681]
  7. Zhao T, et al.
    A truncated NLR protein, TIR-NBS2, is required for activated defense responses in the exo70B1 mutant.
    PLoS Genet., 2015. 11(1): p. e1004945
    [PMID:25617755]
  8. Safavian D, et al.
    RNA Silencing of Exocyst Genes in the Stigma Impairs the Acceptance of Compatible Pollen in Arabidopsis.
    Plant Physiol., 2015. 169(4): p. 2526-38
    [PMID:26443677]
  9. Mayers JR, et al.
    SCD1 and SCD2 Form a Complex That Functions with the Exocyst and RabE1 in Exocytosis and Cytokinesis.
    Plant Cell, 2017. 29(10): p. 2610-2625
    [PMID:28970336]