PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00009.1.g11520.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 324aa MW: 35191.3 Da PI: 7.3721

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00009.1.g11520.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.4	7.1e-09	147	186	4	43
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 kr +r NR +A+rsR RK+++i eLe+ v +L+++++ Zjn_sc00009.1.g11520.1.am.mk 147 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQQQRR 186 5999*******************************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0095	144	197	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.829	146	187	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.84E-9	148	187	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.2E-10	148	186	No hit	No description
Pfam	PF00170	4.0E-7	148	184	IPR004827	Basic-leucine zipper domain
CDD	cd14703	4.05E-17	149	182	No hit	No description
PROSITE pattern	PS00036	0	151	166	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MAQLPPRIPA AVHHWPEGGH HGAASAWADD FVEFAASRRG AHRRSLSDSV AFVEVAPADG 60 GAGEFDRLDD DQLMSMFPDE GGSASAPGSE NGGSDSDGRD KRPAAAAVGA GKECDDERNG 120 NVVAKEPVPG QDAAATVAAP TELIRDPKRV KRILANRQSA QRSRVRKLQY ISELERSVTT 180 LQQQRREREP MCVRGVEPWR PAPFAWQPRD ATHLASSSPE VVVGSSSSRV PSPVHNEVSV 240 LSPRVAFLDQ QRTILTVGNS HLKQRIAALA QDKIFKDAHQ EALKKEIERL RQVYEQQNLK 300 MSAGAPASEH GPPPPVRAEK ELMS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT039136	9e-93	BT039136.1 Zea mays full-length cDNA clone ZM_BFb0374H13 mRNA, complete cds.
GenBank	BT087285	9e-93	BT087285.1 Zea mays full-length cDNA clone ZM_BFb0029G15 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969997.1	1e-141	basic leucine zipper 6
Swissprot	Q5JMK6	1e-108	BZP06_ORYSJ; Basic leucine zipper 6
TrEMBL	A0A0A9PQJ5	1e-140	A0A0A9PQJ5_ARUDO; Uncharacterized protein
STRING	Pavir.Ea02752.1.p	1e-140	(Panicum virgatum)
STRING	Si002546m	1e-140	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1322	38	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	3e-70	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]