PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00009.1.g08230.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 273aa MW: 29440.1 Da PI: 7.8637 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 66.6 | 4e-21 | 99 | 160 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSS..TTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaed..pkvveitYegeHnhe 59 Dg+ WrKYGqKe++g ++pr Y+rC+ + +C+++++v+r++ed p + ei Y geH+++ Zjn_sc00009.1.g08230.1.sm.mk 99 ADGFIWRKYGQKEINGRKHPRLYHRCANRhlSCTATRRVQRTHEDhePAAYEIAYYGEHTCS 160 6**************************9989**********9987336799*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.4E-21 | 92 | 160 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-19 | 93 | 160 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.388 | 93 | 160 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.8E-25 | 98 | 161 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.1E-22 | 100 | 159 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MALVSPYAVV LDLMTMGQQS LAYLTDQFRD APPQQELAVE ILRCCNRVIA ALRAGSSGKK 60 RKHEDAAVAA ASSPPAMPPR KRPRGAEEPT RVVTSGTTAD GFIWRKYGQK EINGRKHPRL 120 YHRCANRHLS CTATRRVQRT HEDHEPAAYE IAYYGEHTCS GAAVAASPAP RPPALVDFGS 180 NAWASVGPAA PAPVSERRQV LSWEREMLSP GGWSSSASSA EARFEAQTTH DAAPVEQPCY 240 APGPVTEFLD GSLDWASVLN GGSFDFGALA TLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-16 | 100 | 159 | 10 | 68 | OsWRKY45 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817680.1 | 5e-81 | probable WRKY transcription factor 66 | ||||
TrEMBL | A0A3L6R3U8 | 2e-81 | A0A3L6R3U8_PANMI; Putative WRKY transcription factor 38 | ||||
STRING | Si002401m | 1e-79 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8322 | 31 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 3e-17 | WRKY DNA-binding protein 46 |