PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00009.1.g07950.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 601aa    MW: 66051.7 Da    PI: 8.5139
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00009.1.g07950.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.79.9e-33202258259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   dDgynWrKYGqK+vkgse+prsY++Ct+++Cp+kkkve+s+ d++++ei+Y+g+Hnh 
  Zjn_sc00009.1.g07950.1.sm.mk 202 DDGYNWRKYGQKQVKGSENPRSYFKCTFPNCPTKKKVETSQ-DGQITEIVYKGTHNHA 258
                                   8***************************************9.***************7 PP
2WRKY105.23.4e-33348406159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  Zjn_sc00009.1.g07950.1.sm.mk 348 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDLRAVITTYEGKHNHD 406
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-28192260IPR003657WRKY domain
PROSITE profilePS5081122.412196260IPR003657WRKY domain
SuperFamilySSF1182909.68E-25196260IPR003657WRKY domain
SMARTSM007741.6E-35201259IPR003657WRKY domain
PfamPF031067.8E-25202257IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-37333408IPR003657WRKY domain
SuperFamilySSF1182902.09E-29340408IPR003657WRKY domain
PROSITE profilePS5081138.526343408IPR003657WRKY domain
SMARTSM007741.4E-38348407IPR003657WRKY domain
PfamPF031061.3E-25349406IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MRPNDESIDT MPPLPCHVCT GMAAQPWGFD FSLCTYEVQQ VERNANAFRM FQLFPSPTVG  60
AFASQQYSWM PSQGAEQGGN NREEQRQSSS YPDFSFQPAA PTSEEAVRTT TTFQPPIPLA  120
SLVRSASILC CDPREGEEAY SSQQQAPWGF QHQPGMDAGA TQAAFGGASF QATSSDATVM  180
APHVQGSGGG YSQTQSQRRS SDDGYNWRKY GQKQVKGSEN PRSYFKCTFP NCPTKKKVET  240
SQDGQITEIV YKGTHNHAKP QNTRRKSSAA AQLMQSGDAS EHSFGGTPEN SASFGDDDNA  300
GGDDFDEDEP DSKRWRRENE AEGISMAGNR TVREPRVVVQ TMSDIDILDD GYRWRKYGQK  360
VVKGNPNPRS YYKCTTTGCP VRKHVERASH DLRAVITTYE GKHNHDVPAA RGSAAALYRP  420
VPPPPDNGAG SSSHHYLAAT YQSSGAGQQY APGFNGQGSS FGLQSAAGGG FAFSGFDNPM  480
GSYMSQHHQQ QRQNDAMHAS RAKEEPREDM PLDSGSKNIA FWHAREVPRW MGASAVKRGM  540
PDWIKRPGKQ RPLLVSAPDD VDKVRASGYR HQLLRSRGCV KRTPRLSLRQ QPRVPAQQAN  600
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-35187409378Probable WRKY transcription factor 4
2lex_A2e-35187409378Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0539941e-123BT053994.1 Zea mays full-length cDNA clone ZM_BFc0103O21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970421.30.0WRKY transcription factor WRKY24
SwissprotQ6IEQ70.0WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A1E5WCJ00.0A0A1E5WCJ0_9POAL; Putative WRKY transcription factor 33
STRINGSi000906m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.17e-90WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]