PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00009.1.g07180.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 176aa    MW: 19056.2 Da    PI: 5.8799
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00009.1.g07180.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00175072123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C+ C k+F++   L  H  +H
  Zjn_sc00009.1.g07180.1.sm.mk 50 FECKTCRKRFPSFQALGGHRTSH 72
                                  89**********99998888777 PP
2zf-C2H212.10.0006298120123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C  Cg  Fs    L  H+r+H
  Zjn_sc00009.1.g07180.1.sm.mk  98 HECAVCGLEFSMGQALGGHMRRH 120
                                   78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.12E-54774No hitNo description
PfamPF139124.1E-114972IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.1595077IPR007087Zinc finger, C2H2
SMARTSM003550.325072IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.9E-596125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.14E-696125No hitNo description
PfamPF139123.9E-1197122IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.21798125IPR007087Zinc finger, C2H2
SMARTSM003550.8998120IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MTLSTRQEAE ESKEMEEGLK AHADALLSLS LSSTTTTTSS RKAMAAEGVF ECKTCRKRFP  60
SFQALGGHRT SHTRLQARML SDPPAATAAE RDARARTHEC AVCGLEFSMG QALGGHMRRH  120
RGEAPPAVLA QQEEETMPDL NFPPLENDDG GGGRTGQDQE PSSGDQQHPQ LLNLLV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703066e-80HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817787.14e-67zinc finger protein ZAT12-like
TrEMBLA0A2S3HQN81e-65A0A2S3HQN8_9POAL; Uncharacterized protein
TrEMBLA0A2T7DEP51e-65A0A2T7DEP5_9POAL; Uncharacterized protein
STRINGBRADI2G54500.11e-62(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.11e-22C2H2 family protein