PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00009.1.g05830.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 425aa MW: 46518.2 Da PI: 8.1

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00009.1.g05830.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	6.1e-06	220	239	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r n++ H+ Zjn_sc00009.1.g05830.1.am.mk 220 FVCHVCNKTFNRYNNMQMHM 239 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.29E-5	216	243	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.6E-5	220	239	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.305	220	247	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	222	242	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.77E-5	288	324	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MGLRTCAMES DAAVGSRFFQ WLKPRCSSSS SSRSSSYSSS SEASMASASV TRHRDVAVRG 60 EEGGGGGGGG QEVSSVTCLP LLSRLEGEKR PEDHEAPHPL REEIVGVAAT GGTWQSGVDL 120 NIGLPVGDED AAMDEKDDAE EHHEEENEEE EMEEWKQHMR AGCKAEMELE RGDAVAASVE 180 GSSKIVVREF GTVGAESGVA TGCRYWIPTP AQILIGPVQF VCHVCNKTFN RYNNMQMHMW 240 GHGREYRKGP DSLKGSQTLA MLKLPCYCCA AGCKNNIAHP RARPLKDFRT LQTHYKRKHG 300 SKPFRCRRCA KPFAVKGDWR THEKNCGKRW FCACGSDFKH KRSLNDHVRS FGADHRPVNE 360 PPAAAAAARE RTIRFHRPVA ALDLVASVAH AQGASPQKMS TFFARATCAR VNGESDGCTH 420 AQGRS

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MGLRTCAMES DAAVGSRFFQ WLKPRCSSSS SSRSSSYSSS SEASMASASV TRHRDVAVRG  60
EEGGGGGGGG QEVSSVTCLP LLSRLEGEKR PEDHEAPHPL REEIVGVAAT GGTWQSGVDL  120
NIGLPVGDED AAMDEKDDAE EHHEEENEEE EMEEWKQHMR AGCKAEMELE RGDAVAASVE  180
GSSKIVVREF GTVGAESGVA TGCRYWIPTP AQILIGPVQF VCHVCNKTFN RYNNMQMHMW  240
GHGREYRKGP DSLKGSQTLA MLKLPCYCCA AGCKNNIAHP RARPLKDFRT LQTHYKRKHG  300
SKPFRCRRCA KPFAVKGDWR THEKNCGKRW FCACGSDFKH KRSLNDHVRS FGADHRPVNE  360
PPAAAAAARE RTIRFHRPVA ALDLVASVAH AQGASPQKMS TFFARATCAR VNGESDGCTH  420
AQGRS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064334	0.0	AK064334.1 Oryza sativa Japonica Group cDNA clone:002-107-G07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002458800.1	1e-156	protein TRANSPARENT TESTA 1
TrEMBL	A0A3L6RIY5	1e-158	A0A3L6RIY5_PANMI; Uncharacterized protein
STRING	Sb03g040490.1	1e-156	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4472	36	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51220.1	5e-93	WIP domain protein 5