PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g03570.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 431aa    MW: 46928.1 Da    PI: 6.674
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g03570.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2378.2e-12129185155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Zjn_sc00008.1.g03570.1.am.mk 129 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 185
                                   57*******************5444.2455536655.779999**************98 PP
2AP232.32.4e-102783191155
                           AP2  11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Zjn_sc00008.1.g03570.1.am.mk 278 EHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 319
                                   37******988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-9129185IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-15129195IPR016177DNA-binding domain
CDDcd000187.91E-18129195No hitNo description
SMARTSM003802.5E-23130199IPR001471AP2/ERF domain
PROSITE profilePS5103217.477130193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-12130194IPR001471AP2/ERF domain
PRINTSPR003674.8E-5131142IPR001471AP2/ERF domain
PRINTSPR003674.8E-5175195IPR001471AP2/ERF domain
PROSITE profilePS5103216.529267327IPR001471AP2/ERF domain
CDDcd000181.27E-18275329No hitNo description
SMARTSM003806.6E-24275333IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-15275328IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-14276329IPR016177DNA-binding domain
PfamPF008472.3E-5278319IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDMDMSSTTY PHHWLSFSLS NNYHHGLLEA FSNSSAPQLG EEGAGVEETP KMEDFLGGVG  60
GIGAPHAAPA EDHQLGCGEL GSIAAGFCRQ YPASGMPENP GAVTIATGME VAESDQARRP  120
AETCGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQGGYDKEE KAARAYDLAA  180
LKYWGPTTTT NFPVSNYEKE LEEMKSMTRQ EFIASLRRAV LAAAFFATYT PRRTRACGHS  240
VCWPVAMGSH VDLFVFLLFC QEEQRLLTRS LHLQRSHEHG RWQARIGRVA GNKDLYLGTF  300
STQEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVESIVNSD LPVGGGAAGR ASKFPGSNNS  360
GGVMWGAAAG AMGQHDSTGN KQSHGYVSNI PYAASVAMTA GYEGSTGNNG TWVTSATSTA  420
PQFYNYLFGM E
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0400031e-98BT040003.1 Zea mays full-length cDNA clone ZM_BFc0057O19 mRNA, complete cds.
GenBankKJ7274851e-98KJ727485.1 Zea mays clone pUT5344 AP2-EREBP transcription factor (EREB152) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965682.11e-178AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-103AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A1E5V5G50.0A0A1E5V5G5_9POAL; AP2-like ethylene-responsive transcription factor AIL5
STRINGSi008325m1e-177(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.18e-97AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]