PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00008.1.g02420.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 618aa MW: 67117.9 Da PI: 9.8181 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 1e-16 | 202 | 249 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+llvd v+++G g+W+++ r+ g+ R++k+c++rw ++l Zjn_sc00008.1.g02420.1.am.mk 202 KGPWTQAEDKLLVDHVRRHGEGNWNAVRRETGLQRCGKSCRLRWANHL 249 79******************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.869 | 197 | 253 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.32E-24 | 200 | 316 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-13 | 201 | 251 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 202 | 249 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-21 | 203 | 256 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.80E-11 | 204 | 249 | No hit | No description |
SMART | SM00717 | 2.4E-6 | 254 | 322 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 10.865 | 254 | 324 | IPR017930 | Myb domain |
CDD | cd00167 | 1.41E-4 | 257 | 318 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-20 | 257 | 323 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 618 aa Download sequence Send to blast |
MMSDRAGYIA GDAMSLANAL QGRNRLNLEK RLRLSARKCH ANRPRLKSGC SACTATSVWR 60 ARSGSCTAHL ITPTPGWGLR FPCPAAITTP PPPPASPLLL PPPRKGKAVG DRPPAPRRSS 120 NPRRLHGCCC RFAAFLPAVG TITRSSEIKE FGEVLGRGGE KRDRRHTASK QQGTTTGAEG 180 TMARLGSSGD GGEGGGGGAL RKGPWTQAED KLLVDHVRRH GEGNWNAVRR ETGLQRCGKS 240 CRLRWANHLR PNLRKGPFSP EEERHILRLH GLIGNKWARI STLSFGVFFK LVIFFFRTLC 300 SPQLPGRTDN EIKNYWNTRF KRRQRAGLPL YPPDIEREVA MLRAQNVNPF ADNDGNACAN 360 ANASFPAPLL FDAANPFSLP PTDPSPSGSA TASHSPLINQ NYPLLNQMQG MQQLHFANPQ 420 QGNCGSAPQL VFHQDVHTGL GHSGFGAGLP PLPNRVHELP SIQFDTASSG NALLNSLQLG 480 DVHMPRATPT MFRVGSMPEL MNRDPSSGMM VHHGGASDSD VTSQCPPGED HLQQGGKWDF 540 ILEDVKPAKR KAASEVELNV SDMYGANPVE WIGNNGGSTV PSPGSASAVT DEEFNLEMQQ 600 FMSLLPQSLD EPNWNAQI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 200 | 323 | 5 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373804 | 2e-95 | AK373804.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3044A21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813892.1 | 1e-172 | transcription factor MYB97-like | ||||
TrEMBL | K3XX97 | 0.0 | K3XX97_SETIT; Uncharacterized protein | ||||
STRING | Si006555m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12397 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 1e-54 | myb domain protein 101 |