PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00008.1.g00230.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 432aa MW: 46766.2 Da PI: 7.7097

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00008.1.g00230.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.3	1.5e-17	138	182	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++avk++G W+ I +++g ++t+ q++s+ qk+ Zjn_sc00008.1.g00230.1.am.mkhc 138 REKWTEEEHDKFLEAVKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 182 789***************55.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-11	132	184	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.722	133	187	IPR017930	Myb domain
SuperFamily	SSF46689	1.2E-15	133	186	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-16	136	185	IPR006447	Myb domain, plants
SMART	SM00717	8.8E-15	137	185	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-15	138	181	IPR001005	SANT/Myb domain
CDD	cd00167	1.03E-11	140	183	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MGCTSDVARF PPHPFALPPK ICRSRHAFIF FLSPFAAAVA RLLLPPLFCV APSSAIILSC 60 SPESISRGVG RLRFELWDRL IMATVALVEE RDGVESSSLR PPLDVAKPPV VDGAMQFKEG 120 MDGYPVKVRK PYKITKQREK WTEEEHDKFL EAVKLYGRSW RQIQEHIGTK TAVQIRSHAQ 180 KFFSKVVREP GAGDMIEIPP PRPKRKPLHP YPRKCANSST RADPKLGPVS PSSGSYQENG 240 SPVSVLSAVQ SDAFGSSVSN PSTGCTSPAS SDGGNNGLVM LNGEEILPSN QAEMDLSPKE 300 VKQDNSDGDL SEEDSSRKAS LKLFGKTLII PDPKKLCSLD GGPQSSAKEM FEAAFIGGVA 360 TYAAANEWLL QRHSFPFCAG ESETGKSPSA ESSSDSMGGV QTTMLTNGEV AKDETKLQRI 420 SVDKGICAIQ EV

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MGCTSDVARF PPHPFALPPK ICRSRHAFIF FLSPFAAAVA RLLLPPLFCV APSSAIILSC  60
SPESISRGVG RLRFELWDRL IMATVALVEE RDGVESSSLR PPLDVAKPPV VDGAMQFKEG  120
MDGYPVKVRK PYKITKQREK WTEEEHDKFL EAVKLYGRSW RQIQEHIGTK TAVQIRSHAQ  180
KFFSKVVREP GAGDMIEIPP PRPKRKPLHP YPRKCANSST RADPKLGPVS PSSGSYQENG  240
SPVSVLSAVQ SDAFGSSVSN PSTGCTSPAS SDGGNNGLVM LNGEEILPSN QAEMDLSPKE  300
VKQDNSDGDL SEEDSSRKAS LKLFGKTLII PDPKKLCSLD GGPQSSAKEM FEAAFIGGVA  360
TYAAANEWLL QRHSFPFCAG ESETGKSPSA ESSSDSMGGV QTTMLTNGEV AKDETKLQRI  420
SVDKGICAIQ EV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966527.1	1e-142	uncharacterized protein LOC101785788
TrEMBL	K3XWZ9	1e-141	K3XWZ9_SETIT; Uncharacterized protein
STRING	Si006457m	1e-142	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7783	36	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	3e-38	MYB_related family protein