PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00007.1.g10810.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 519aa    MW: 56810.9 Da    PI: 6.0251
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00007.1.g10810.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.95.6e-134553487
                        trihelix 34 vskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                                     s k+++ g+ rs+k+Ckek+en+ k+y+++ke + +r++++s  +++f++lea
  Zjn_sc00007.1.g10810.1.sm.mkhc  4 ASLKLAALGYVRSAKKCKEKFENVDKYYRRTKEARAGRQDGKS--YRFFSELEA 55
                                    5778999******************************866665..******985 PP
2trihelix107.68.3e-34281366187
                        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                                     rW+k+ev+aLi++r+e++e+  ++ +k+plWe++++ mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +++s+tc
  Zjn_sc00007.1.g10810.1.sm.mkhc 281 RWPKEEVQALIRLRTEKDEQCHDTGSKGPLWEDIAAGMRRIGYNRSAKRCKEKWENINKYFKKVKESNKRR-PQDSKTC 358
                                     8********************************************************************97.9****** PP

                        trihelix  80 pyfdqlea 87 
                                     pyf+ql+a
  Zjn_sc00007.1.g10810.1.sm.mkhc 359 PYFHQLDA 366
                                     ******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.3E-9556No hitNo description
SMARTSM007173.0E-5278340IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-5279337IPR009057Homeodomain-like
PROSITE profilePS500907.898280338IPR017877Myb-like domain
PfamPF138372.8E-22280367No hitNo description
SuperFamilySSF466892.74E-5280350IPR009057Homeodomain-like
CDDcd122036.33E-27281345No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MKDASLKLAA LGYVRSAKKC KEKFENVDKY YRRTKEARAG RQDGKSYRFF SELEALHAAA  60
PQQRRQQASG QADPQPSAPM SWTTAPAALA PPGAGLPELS FSSMSGSESE SDDDEFDVDG  120
AEDHGKGDGD ATVCDKEMMA LFEGMMRQVT EKQDAMQRVF LDTLERWEAE RTAREEAWRR  180
QEVARMNRER EQLAKERASA ASRDAALIAF LQRVGGGGQP VRLPPPSAVA VPTPMPDRAP  240
PSPRQDAANT SPLQVVSVPS KPEESWAWAG GESSGGSTSS RWPKEEVQAL IRLRTEKDEQ  300
CHDTGSKGPL WEDIAAGMRR IGYNRSAKRC KEKWENINKY FKKVKESNKR RPQDSKTCPY  360
FHQLDAMYRK KRFAGRPGSG AASEAHLSTV TASSQTSPSQ RELEGKSSND AGKQNIIGAA  420
NVHALPSEMA SAATILGDGA KNKKPEDTET ETNMQLQQQH EFAADETDSD DMVMEGLYTD  480
EGNDGDRMQY KTGSSGNTPA PTETAAAATS SASTFLAVQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0548720.0BT054872.1 Zea mays full-length cDNA clone ZM_BFc0165O02 mRNA, complete cds.
GenBankBT0677670.0BT067767.1 Zea mays full-length cDNA clone ZM_BFc0150E20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798824.10.0trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A3L6QGT40.0A0A3L6QGT4_PANMI; Trihelix transcription factor GTL1-like isoform X1
STRINGSi016578m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.23e-49Trihelix family protein