PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00007.1.g09230.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 326aa MW: 35405.7 Da PI: 8.7375 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.3 | 7.7e-18 | 154 | 204 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + +kGVr++ grWv+e+r+p g ++r++lg+f tae+Aa+a++ a+++l+g Zjn_sc00007.1.g09230.1.am.mk 154 PVFKGVRRRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAALALRG 204 579****887.9******9996..33.5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.3E-13 | 154 | 204 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-27 | 155 | 218 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-20 | 155 | 213 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.588 | 155 | 212 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-29 | 155 | 214 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-7 | 156 | 167 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.57E-28 | 156 | 214 | No hit | No description |
PRINTS | PR00367 | 1.6E-7 | 178 | 194 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 326 aa Download sequence Send to blast |
MPPRCARPHR PPRPRELQLF PTQLRPASPN PSPPSSVPDP SQVALPGWRL PCRTALEQGT 60 RPRRTPRGKL YNPATFPSQI QTTPSSLASL AAPTLHSTHQ IAMDVGAFSS DYSSGTPSPV 120 GGGDDDGSPS YMTVSSAPPK RRAGRTKFKE TRHPVFKGVR RRNPGRWVCE VREPHGKQRI 180 WLGTFETAEM AARAHDVAAL ALRGRGACLN FADSPRLLRV PPVGAGHDEI RRAAAEAAEQ 240 FRPALDQGNV AVEEPITTMP DLFSSESTQS ADHHPYCMVD DRFDFGMQGY LDMAQGMLID 300 PPPMGGSSSG NGGDDNDGGE VRLWSY |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00644 | PBM | Transfer from LOC_Os02g45450 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953437.2 | 1e-114 | dehydration-responsive element-binding protein 1G | ||||
Swissprot | Q6EP77 | 2e-98 | DRE1G_ORYSJ; Dehydration-responsive element-binding protein 1G | ||||
TrEMBL | K3YVG6 | 1e-113 | K3YVG6_SETIT; Uncharacterized protein | ||||
STRING | Si018262m | 1e-114 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25470.1 | 4e-34 | C-repeat/DRE binding factor 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|