PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00007.1.g01570.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 393aa    MW: 41765.6 Da    PI: 9.2354
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00007.1.g01570.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.7e-18310343134
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                   C++C+  +Tp+WR gp g+ktLCnaCG++y++ +
  Zjn_sc00007.1.g01570.1.am.mk 310 CTHCQIESTPQWRAGPLGPKTLCNACGVRYKSGR 343
                                   *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.543304340IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-15304354IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-14308341IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.61E-14308367No hitNo description
CDDcd002021.62E-13309366No hitNo description
PROSITE patternPS003440310335IPR000679Zinc finger, GATA-type
PfamPF003202.5E-15310343IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MASLFIRARL GTQAKSRLSM ASGAFVDQML REQRLLEATC GDLFDHIEDL LDFSKEDSAA  60
DVLLLDAPAP GSPLSARIID VGARSNAVEP SPALVAPAQD GLFVDSAAAG AQGFKDGGHI  120
GSVSSSVSCP YCWMVVSVMM APRRRTGGAA PVPGDHRPCR SCEALHHSFE DARKTRRGVG  180
HSGIRCAGWM IGAGWGVGAP SLCLLFTVGL PPALVIPARA RSKRSRASAF SGDRAVEPPT  240
ILVPTPMYSA ASSHSDPESI AESNPDPAPP KKKKKAKKPA PAPAASDAEG DADYVEGGER  300
SRPQGAVRRC THCQIESTPQ WRAGPLGPKT LCNACGVRYK SGRLFPEYRP AASPTFVPSI  360
HSNSHKKVVE MRQKAVRSGD PSCDLLQFIR RRD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0542691e-170BT054269.1 Zea mays full-length cDNA clone ZM_BFb0206G24 mRNA, complete cds.
GenBankBT0557551e-170BT055755.1 Zea mays full-length cDNA clone ZM_BFb0170C21 mRNA, complete cds.
GenBankBT0670671e-170BT067067.1 Zea mays full-length cDNA clone ZM_BFb0175B18 mRNA, complete cds.
GenBankEU9676751e-170EU967675.1 Zea mays clone 305252 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807686.11e-93GATA transcription factor 8-like
RefseqXP_025807694.11e-93GATA transcription factor 8-like
TrEMBLA0A2T7FDI52e-92A0A2T7FDI5_9POAL; Uncharacterized protein
STRINGPavir.Ab03246.1.p4e-91(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-36GATA family protein