PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00007.1.g00230.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 112aa MW: 11796.6 Da PI: 12.2682 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 71.9 | 2e-22 | 1 | 51 | 24 | 74 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasece 74 +++ c a +F+L++eLG+++d++tieWLl+qa+p+i+ +tgt++++as ++ Zjn_sc00007.1.g00230.1.sm.mk 1 MPIICTAPVFQLTRELGHKSDGQTIEWLLRQAEPSIIVATGTGTTPASVST 51 9*****************************************999995551 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 18.159 | 1 | 39 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 7.8E-17 | 1 | 56 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MPIICTAPVF QLTRELGHKS DGQTIEWLLR QAEPSIIVAT GTGTTPASVS TSSFSPTAVD 60 GMPIIAAPMT TPKLHPSLRR ASGRFRRGLT PLASSAASGP RLTSPSRTRR GT |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK240798 | 6e-45 | AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence. | |||
GenBank | AP004776 | 6e-45 | AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04. | |||
GenBank | AP014958 | 6e-45 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 6e-45 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018436782.1 | 2e-26 | PREDICTED: transcription factor TCP7-like | ||||
TrEMBL | A0A2U1L6V6 | 9e-25 | A0A2U1L6V6_ARTAN; Transcription factor, TCP |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08330.1 | 5e-29 | TCP family protein |