PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G08330.1 | ||||||||
Common Name | AtTCP11, CHE, F8L15.60, TCP11, TCP21 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TCP | ||||||||
Protein Properties | Length: 239aa MW: 24751.6 Da PI: 10.2008 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 124.4 | 1.3e-38 | 25 | 192 | 2 | 119 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas...nsssg........ 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s s+ + AT5G08330.1 25 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASLSTSSPftlG---Krvvraeeg 118 79**************************************************************99999777.2222222222220...133444444 PP TCP 89 ........................................................kaaksaakskksqksaasalnlakesrakar 119 + ++ ++l + ++++++a+ AT5G08330.1 119 esgggggggltvghtmgtslmggggsggfwavparpdfgqvwsfatgappemvfaqQ-------------QQPATLFVRHQQQQQAS 192 455667777777777777777777777888888888888777654444433333322.............22223333333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.209 | 31 | 85 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.5E-32 | 31 | 149 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042752 | Biological Process | regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MADNDGAVSN GIIVEQTSNK GPLNAVKKPP SKDRHSKVDG RGRRIRMPII CAARVFQLTR 60 ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTASL STSSPFTLGK RVVRAEEGES 120 GGGGGGGLTV GHTMGTSLMG GGGSGGFWAV PARPDFGQVW SFATGAPPEM VFAQQQQPAT 180 LFVRHQQQQQ ASAAAAAAMG EASAARVGNY LPGHHLNLLA SLSGGANGSG RREDDHEPR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.22911 | 0.0 | floral meristem| flower| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30682338 | 0.0 | ||||
Genevisible | 246011_at | 0.0 | ||||
Expression Atlas | AT5G08330 | - | ||||
AtGenExpress | AT5G08330 | - | ||||
ATTED-II | AT5G08330 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, roots, and stems. {ECO:0000269|PubMed:19286557}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00499 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G08330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT5G23280, AT5G51910, AT5G60120, AT5G60970, AT1G19000, AT1G24625, AT1G30210, AT1G35560, AT1G53230, AT1G58100, AT1G69690 | |||||
IntAct | Search Q9FTA2 |
Phenotype -- Disruption Phenotype ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DISRUPTION PHENOTYPE: No effect on the period length or phase of the circadian clock. {ECO:0000269|PubMed:19286557}. |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G08330 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF412074 | 0.0 | AF412074.1 Arabidopsis thaliana AT5g08330/F8L15_60 mRNA, complete cds. | |||
GenBank | AL392174 | 0.0 | AL392174.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F8L15 (ESSA project). | |||
GenBank | AY072620 | 0.0 | AY072620.1 Arabidopsis thaliana AT5g08330/F8L15_60 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_196450.1 | 1e-174 | TCP family transcription factor | ||||
Swissprot | Q9FTA2 | 1e-175 | TCP21_ARATH; Transcription factor TCP21 | ||||
TrEMBL | A0A178UQG9 | 1e-172 | A0A178UQG9_ARATH; TCP11 | ||||
STRING | AT5G08330.1 | 1e-173 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1782 | 26 | 85 | Representative plant | OGRP8514 | 10 | 16 |
Link Out ? help Back to Top | |
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Phytozome | AT5G08330.1 |
Entrez Gene | 830730 |
iHOP | AT5G08330 |
wikigenes | AT5G08330 |