PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00006.1.g04730.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 367aa    MW: 39521 Da    PI: 10.9055
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00006.1.g04730.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-20156205255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  Zjn_sc00006.1.g04730.1.sm.mkhc 156 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 205
                                     7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.7E-33155214IPR001471AP2/ERF domain
PROSITE profilePS5103224.711156213IPR001471AP2/ERF domain
CDDcd000186.70E-30156214No hitNo description
PfamPF008471.8E-13156205IPR001471AP2/ERF domain
SMARTSM003804.8E-38156219IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-22156214IPR016177DNA-binding domain
PRINTSPR003671.7E-11157168IPR001471AP2/ERF domain
PRINTSPR003671.7E-11179195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MPGDRRIDPS RSSSDGRKAR SIGSRIRWIP AGSMGNDLYP PTRRKKSHRR RQRPSKSKRR  60
RPNTTTFSGG GSSSSVAPRG ASPSPEAYAQ YYYSARADQD ASAVASALAH VIRASPDKIN  120
PPQGFVYPGP SAPAPEQQHP GHAAAAVEEE QERRRHYRGV RQRPWGKWAA EIRDPKKAAR  180
VWLGTFDTAE DAAIAYDEAA LRFKGTKAKL NFPERVQGRT DLGFLVTRGI PDRRGHTSPA  240
AGVTLAMPPP HQHYQHTVVP YPDVMQYAQL RQGGGQGDAH QQYMMMGADP RGGVNLPFGA  300
AVSPSSSALQ ILDFSTQQLI RPRPPSPAAA LSSSGAGAPS TASSATTASS PSGSVWPYGG  360
EQKDKDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-26155217467ATERF1
3gcc_A3e-26155217467ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14360RKKSHRRRQRPSKSKRRR
24361RKKSHRRRQRPSKSKRRRP
34461KKSHRRRQRPSKSKRRRP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570621e-103EU957062.1 Zea mays clone 1581709 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825288.11e-107uncharacterized protein LOC112900671
TrEMBLA0A3L6PS871e-108A0A3L6PS87_PANMI; AT-rich interactive domain-containing protein 1A-like isoform X1
STRINGGRMZM2G425798_P027e-98(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.12e-30ERF family protein