PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G07310.1 | ||||||||
Common Name | ERF115, T2I1.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 263aa MW: 29405.7 Da PI: 7.0869 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.7e-19 | 91 | 140 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae Aa a+++a++k++g AT5G07310.1 91 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAEAAALAYDNAALKFKG 140 7********.**********93....36************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 9.2E-33 | 90 | 149 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.922 | 91 | 148 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-22 | 91 | 149 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.2E-13 | 91 | 140 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.57E-23 | 91 | 149 | No hit | No description |
SMART | SM00380 | 8.8E-37 | 91 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 92 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 114 | 130 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MANSGNYGKR PFRGDESDEK KEADDDENIF PFFSARSQYD MRAMVSALTQ VIGNQSSSHD 60 NNQHQPVVYN QQDPNPPAPP TQDQGLLRKR HYRGVRQRPW GKWAAEIRDP QKAARVWLGT 120 FETAEAAALA YDNAALKFKG SKAKLNFPER AQLASNTSTT TGPPNYYSSN NQIYYSNPQT 180 NPQTIPYFNQ YYYNQYLHQG GNSNDALSYS LAGGETGGSM YNHQTLSTTN SSSSGGSSRQ 240 QDDEQDYARY LRFGDSSPPN SGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-26 | 90 | 151 | 4 | 66 | ATERF1 |
3gcc_A | 4e-26 | 90 | 151 | 4 | 66 | ATERF1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18415458 | 0.0 | ||||
Genevisible | 250622_at | 0.0 | ||||
Expression Atlas | AT5G07310 | - | ||||
AtGenExpress | AT5G07310 | - | ||||
ATTED-II | AT5G07310 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Restricted to dividing quiescent center cells. {ECO:0000269|PubMed:24158907}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. | |||||
UniProt | Acts as a transcriptional activator of the phytosulfokine PSK5 peptide hormone. Binds to the GCC-box pathogenesis-related promoter element. Rate-limiting factor of quiescent center cell division active when surrounding stem cells are damaged. Is a proteolytic target of APC/C-FZR1 complex. {ECO:0000269|PubMed:24158907}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00495 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G07310.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by brassinosteroid, but not regulated by ethylene. {ECO:0000269|PubMed:24158907}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q9LY29 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G07310 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY560885 | 0.0 | AY560885.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g07310) mRNA, complete cds. | |||
GenBank | BT025717 | 0.0 | BT025717.1 Arabidopsis thaliana At5g07310 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_196348.1 | 0.0 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | Q9LY29 | 0.0 | EF115_ARATH; Ethylene-responsive transcription factor ERF115 | ||||
TrEMBL | A0A178UG22 | 0.0 | A0A178UG22_ARATH; Uncharacterized protein | ||||
STRING | AT5G07310.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5292 | 18 | 51 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
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Phytozome | AT5G07310.1 |
Entrez Gene | 830622 |
iHOP | AT5G07310 |
wikigenes | AT5G07310 |