PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00006.1.g02540.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 157aa MW: 16413.4 Da PI: 7.9625

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00006.1.g02540.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C++ F+++ L H++ H Zjn_sc00006.1.g02540.1.am.mk 43 FACCYCPRKFRSSQALGGHQNAH 65 78******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.034	43	70	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	45	65	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MERVLGSCIP GMEMVDRDGD GLDLSLSLHC SPSSPPRFQL AVFACCYCPR KFRSSQALGG 60 HQNAHKLQRN LARRGHHPAP VAAVVADQGG NYNKPAGSAS APHSAAEFGV VDAWGEGRDH 120 RGHLHHVTAT GGASASSAGA KGAGEVKEEI IDLSLKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001169428.1	1e-49	uncharacterized protein LOC100383297
TrEMBL	C0PEV7	3e-48	C0PEV7_MAIZE; C2H2 zinc finger malformed spikelet
STRING	GRMZM2G074793_P01	5e-49	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6992	26	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	1e-12	zinc-finger protein 1