PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00006.1.g00930.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 516aa MW: 55240.4 Da PI: 8.8159

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00006.1.g00930.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00094	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp Cgk+F + + H+r+H Zjn_sc00006.1.g00930.1.am.mk 77 TCPECGKTFLSDKAMYGHLRSH 98 8**********99999999999 PP
2	zf-C2H2	13.1	0.00029	370	392	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp C ksF+++ L H H Zjn_sc00006.1.g00930.1.am.mk 370 YVCPTCLKSFPTHQALGGHKAAH 392 9************9998887666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.68E-7	76	98	No hit	No description
SMART	SM00355	0.011	76	98	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.367	76	98	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	98	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.6E-4	78	100	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.68E-7	365	392	No hit	No description
PROSITE profile	PS50157	8.995	370	392	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.18	370	392	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.9E-9	370	393	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	372	392	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.52	460	482	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.1E-8	460	483	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.182	460	482	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	462	482	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MDLRAYCIKA TEAASALSIH SEDDEEVVKL TSNAVLLKLE VEAGTSAGVT ASCKGSGLSP 60 LGLDNAKAAG SRGRDLTCPE CGKTFLSDKA MYGHLRSHPE RGYKGAIRPD ATASVTAVAG 120 DKKPERKVPQ KEAGESPATN ISVTTPAVAG EKRQKEESWL WTKWSVTAKR RRGSSTPSAA 180 SAPVAAAQSS SSCSEEEEAA MILLEIASGV TTSETQQSRQ TVSTRDAKHQ IPEVDEQPML 240 LDHVARNQMI PEFAQLMSPD HVACDVMAHQ TLEDWQQIVQ PELVPVVILE SQTPEIKELT 300 VPKDAVVAMF QDKKTPANQQ QRAAPGRGAK KSKKRRVLNA KKTPETAPPE AANVKQPVNR 360 VPSRASNKKY VCPTCLKSFP THQALGGHKA AHNKGGGGKH GVYHDDPAMV QAMRNILARQ 420 KQSSNAVIGG TAVAEGAVIG AGQDQERHDS GPPVPPAAQH VCAECNMAFR SGQALGGHKR 480 KHWYLVKQQA KAAPNAALRD LDLNELPRDV EGENKP

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MDLRAYCIKA TEAASALSIH SEDDEEVVKL TSNAVLLKLE VEAGTSAGVT ASCKGSGLSP  60
LGLDNAKAAG SRGRDLTCPE CGKTFLSDKA MYGHLRSHPE RGYKGAIRPD ATASVTAVAG  120
DKKPERKVPQ KEAGESPATN ISVTTPAVAG EKRQKEESWL WTKWSVTAKR RRGSSTPSAA  180
SAPVAAAQSS SSCSEEEEAA MILLEIASGV TTSETQQSRQ TVSTRDAKHQ IPEVDEQPML  240
LDHVARNQMI PEFAQLMSPD HVACDVMAHQ TLEDWQQIVQ PELVPVVILE SQTPEIKELT  300
VPKDAVVAMF QDKKTPANQQ QRAAPGRGAK KSKKRRVLNA KKTPETAPPE AANVKQPVNR  360
VPSRASNKKY VCPTCLKSFP THQALGGHKA AHNKGGGGKH GVYHDDPAMV QAMRNILARQ  420
KQSSNAVIGG TAVAEGAVIG AGQDQERHDS GPPVPPAAQH VCAECNMAFR SGQALGGHKR  480
KHWYLVKQQA KAAPNAALRD LDLNELPRDV EGENKP

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14400	14	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	3e-08	C2H2 family protein