PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00005.1.g08320.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 358aa MW: 39062.8 Da PI: 8.1036

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00005.1.g08320.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.4	4.2e-51	27	159	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhPtdeel+ +yL+k++ + ++++ +vi+evdiyk++PwdLp+k+ ++ ewyfFs+rd+ky++g r+nra+ Zjn_sc00005.1.g08320.1.sm.mkhc 27 LPPGFRFHPTDEELILHYLRKRAGAVSCPA-RVIAEVDIYKLDPWDLPAKAVFGDGEWYFFSPRDRKYPNGVRPNRAAG 104 79*************************9.99***********87778999******************* PP NAM 80 sgyWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 sgyWkatg+dk+++++ +g+ +g+kk Lvfy+gr pkg kt+W+mheyrl Zjn_sc00005.1.g08320.1.sm.mkhc 105 SGYWKATGTDKPITHSaasvsnRGAMIGVKKALVFYRGRPPKGMKTSWIMHEYRL 159 ***********98888877778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-63	23	192	IPR003441	NAC domain
PROSITE profile	PS51005	60.395	27	192	IPR003441	NAC domain
Pfam	PF02365	1.8E-26	28	159	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MTIEFALGEA PSSSSSFAGG GMPPTPLPPG FRFHPTDEEL ILHYLRKRAG AVSCPARVIA 60 EVDIYKLDPW DLPAKAVFGD GEWYFFSPRD RKYPNGVRPN RAAGSGYWKA TGTDKPITHS 120 AASVSNRGAM IGVKKALVFY RGRPPKGMKT SWIMHEYRLA DTLNAANTYC PARFKNASMR 180 LDDWVLCRIY KKTNPQLTYS SSPPLDAEEN YSMDGGLGHG HGQYQQDASI SAANDVAGRL 240 QLPRPPSISD YLVDYSAVSE MFESIPAPRL GTADTGSSSG PAAAHQFLVG NNSELASGSS 300 VAQQSSHNRR LMEDHSNPNM EMLQHSSNKR VLSDHASMAI NDSFSLFGPG FPSLQDRI

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MTIEFALGEA PSSSSSFAGG GMPPTPLPPG FRFHPTDEEL ILHYLRKRAG AVSCPARVIA  60
EVDIYKLDPW DLPAKAVFGD GEWYFFSPRD RKYPNGVRPN RAAGSGYWKA TGTDKPITHS  120
AASVSNRGAM IGVKKALVFY RGRPPKGMKT SWIMHEYRLA DTLNAANTYC PARFKNASMR  180
LDDWVLCRIY KKTNPQLTYS SSPPLDAEEN YSMDGGLGHG HGQYQQDASI SAANDVAGRL  240
QLPRPPSISD YLVDYSAVSE MFESIPAPRL GTADTGSSSG PAAAHQFLVG NNSELASGSS  300
VAQQSSHNRR LMEDHSNPNM EMLQHSSNKR VLSDHASMAI NDSFSLFGPG FPSLQDRI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-70	27	192	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-70	27	192	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-70	27	192	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-70	27	192	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	5e-70	27	192	20	168	NAC domain-containing protein 19
3swm_B	5e-70	27	192	20	168	NAC domain-containing protein 19
3swm_C	5e-70	27	192	20	168	NAC domain-containing protein 19
3swm_D	5e-70	27	192	20	168	NAC domain-containing protein 19
3swp_A	5e-70	27	192	20	168	NAC domain-containing protein 19
3swp_B	5e-70	27	192	20	168	NAC domain-containing protein 19
3swp_C	5e-70	27	192	20	168	NAC domain-containing protein 19
3swp_D	5e-70	27	192	20	168	NAC domain-containing protein 19
4dul_A	5e-70	27	192	17	165	NAC domain-containing protein 19
4dul_B	5e-70	27	192	17	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU955420	1e-132	EU955420.1 Zea mays clone 1531701 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967928.1	1e-141	NAC domain-containing protein 18
TrEMBL	A0A1E5UWU9	1e-140	A0A1E5UWU9_9POAL; NAC transcription factor NAM-B2
TrEMBL	A0A368R221	1e-140	A0A368R221_SETIT; Uncharacterized protein
STRING	Pavir.Ea00837.1.p	1e-131	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1237	36	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	5e-78	NAC domain containing protein 47