PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00005.1.g05270.1.sm.mkhc
Common NameDREB1
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 257aa    MW: 28867.2 Da    PI: 5.4871
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00005.1.g05270.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-1978127255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                      y+GVr++  +g+WvAeIr+p   + r kr +lg+f ta eAa a+++a+++++g
  Zjn_sc00005.1.g05270.1.sm.mkhc  78 AYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGSFPTALEAAHAYDEAARAMYG 127
                                     59****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-1377127IPR001471AP2/ERF domain
SMARTSM003801.3E-3478141IPR001471AP2/ERF domain
PROSITE profilePS5103221.99778135IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-2178136IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-3179137IPR001471AP2/ERF domain
PRINTSPR003674.2E-97990IPR001471AP2/ERF domain
CDDcd000181.20E-2879137No hitNo description
PRINTSPR003674.2E-9101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MERVDGQGAE DAGVQAQVRK KRVRRKSTGP DSIAETIKRW KEHNEKLQEE YGTRKAPAKG  60
SKKGCMAGKG GPENRACAYR GVRQRTWGKW VAEIREPNRG KRLWLGSFPT ALEAAHAYDE  120
AARAMYGPRA RVNFSESSAD ATSGCMSALS LLASNVPPAD QRSDDKDEVE SVETEVHALK  180
VEVNDDLGSI HMERKTMEVF QSEEIILRKE GDVSYDYFHV EDVLEMIIIE LNAAKKIEVH  240
ENEEYHDGDD GFSLFSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1479134662ATERF1
3gcc_A1e-1479134662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8640130.0GQ864013.1 Zoysia japonica cultivar Lanyin 3 DREB-like protein 1 (DREB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968294.11e-137dehydration-responsive element-binding protein 2A isoform X1
SwissprotA2WL191e-119DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLC8CTX00.0C8CTX0_9POAL; DREB-like protein 1
STRINGSi002067m1e-136(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.14e-35ERF family protein