PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00005.1.g02550.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 489aa    MW: 53034.3 Da    PI: 8.6655
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00005.1.g02550.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-15105152148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT eEd  l++ v+  G g+W+  ar  g++Rt+k+c++rw++yl
  Zjn_sc00005.1.g02550.1.am.mk 105 KGPWTVEEDAVLAHHVAANGEGRWNELARAAGLRRTGKSCRLRWLNYL 152
                                   79********************************************97 PP
2Myb_DNA-binding42.51.5e-13158201146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg + + E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Zjn_sc00005.1.g02550.1.am.mk 158 RGDFAPREQLLILELHFRWGNR-WSRIAAHLP-GRTDNEVKNYWRT 201
                                   6778899***************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.578100156IPR017930Myb domain
SuperFamilySSF466893.43E-28103199IPR009057Homeodomain-like
SMARTSM007177.3E-13104154IPR001005SANT/Myb domain
PfamPF002491.5E-13105152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-19106159IPR009057Homeodomain-like
CDDcd001678.16E-10107152No hitNo description
SMARTSM007172.2E-12157205IPR001005SANT/Myb domain
PROSITE profilePS5129415.36157207IPR017930Myb domain
PfamPF002491.1E-12158201IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-21160205IPR009057Homeodomain-like
CDDcd001676.47E-10163201No hitNo description
PROSITE profilePS513759.482397431IPR002885Pentatricopeptide repeat
PfamPF130413.1E-8397443IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MRRPKKRRKK LTKLSSSVRA ALEKGGRRRL VVATASSSSS LNSSPTRFFC PASYAHSSLQ  60
LEEVSDPSRS MDALWMGACE WSSAAASATS IEDEEAAAAA AELRKGPWTV EEDAVLAHHV  120
AANGEGRWNE LARAAGLRRT GKSCRLRWLN YLRPGVRRGD FAPREQLLIL ELHFRWGNRW  180
SRIAAHLPGR TDNEVKNYWR TRVQKHARQL GCDVGSRRFR DVMRQHWMPR LVERIHADSG  240
AAVSQSQPAT TASKQPSYHY IASNNCGSHA KPCASPDASC VTAGPSSPES SHEAQFQTNS  300
PIMDAAGAGY SSSTEQCQYG SGSGDMLDGS WSELLARASP GNADSTGLHD FEFGEIDQPT  360
CKQQLCPHVL DAAAISVIAP GAVHHARGVF DQMSDRNVVA WTAMLFGYAS DGHHREALDL  420
FPRMAAADVA SNEFTLSSVL AACRGGGGGA AGRRCGDSVH AVAMRRGVDR VPYVVNELVD  480
AYASISWTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-2410220524126MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
119RRPKKRRKK
2310PKKRRKKL
348KKRRK
449KKRRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9524381e-134EU952438.1 Zea mays clone 1280407 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817284.11e-113transcription factor JAMYB-like
TrEMBLA0A2S3HVZ61e-112A0A2S3HVZ6_9POAL; Uncharacterized protein
STRINGPavir.Eb01219.1.p1e-105(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.11e-69myb domain protein 112