PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00004.1.g08710.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 494aa MW: 53678.8 Da PI: 10.5546

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00004.1.g08710.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00065	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C + F++ L H+++H Zjn_sc00004.1.g08710.1.am.mk 66 YTCAFCRREFKSAPALGGHMNVH 88 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.84E-5	63	92	No hit	No description
PROSITE profile	PS50157	10.741	66	93	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	68	88	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MAPTNSTEPD VKRITRHQHQ FLKKQQPQQQ LKPAVMCSWA AATVRPAHDD AADEDALGGA 60 WPPRSYTCAF CRREFKSAPA LGGHMNVHRR DRAKMRGHHG AAGQKLVGAA PATGDTPTHA 120 ATPTGYAVLY PILSSSATGT VLTPSGDVLL STRLALAPAH DVSDEDDDKE VDLELRLGIS 180 EAVELAAPAT TEDRPWPWRC RQLHCLHVSV LPHLVCRPEV SGGGRTGVTS TAPRCTARQH 240 SLRSALPLLH ASSSPPPPAA PYGDALPSEL TRERASSPFH ERIGAAARAC RTARTPNRAA 300 RVVTRAMHYW RCTQAGTEQD GLFASQIVVG AKDQEHRRTM HRASPPCRAR LGSGACSSST 360 SNGAACNKVA FFVIRQRVNL VDPVVFHALF ADGKLGMDPS RARSGSPRPH GLASIGTALS 420 AGGIQDRRPA PATTSSRDLC NRPLNYWTMI RRVRARTRRM GDPHRRSSMS KERVYTHLHE 480 QITSSWCHVL SRTL

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MAPTNSTEPD VKRITRHQHQ FLKKQQPQQQ LKPAVMCSWA AATVRPAHDD AADEDALGGA  60
WPPRSYTCAF CRREFKSAPA LGGHMNVHRR DRAKMRGHHG AAGQKLVGAA PATGDTPTHA  120
ATPTGYAVLY PILSSSATGT VLTPSGDVLL STRLALAPAH DVSDEDDDKE VDLELRLGIS  180
EAVELAAPAT TEDRPWPWRC RQLHCLHVSV LPHLVCRPEV SGGGRTGVTS TAPRCTARQH  240
SLRSALPLLH ASSSPPPPAA PYGDALPSEL TRERASSPFH ERIGAAARAC RTARTPNRAA  300
RVVTRAMHYW RCTQAGTEQD GLFASQIVVG AKDQEHRRTM HRASPPCRAR LGSGACSSST  360
SNGAACNKVA FFVIRQRVNL VDPVVFHALF ADGKLGMDPS RARSGSPRPH GLASIGTALS  420
AGGIQDRRPA PATTSSRDLC NRPLNYWTMI RRVRARTRRM GDPHRRSSMS KERVYTHLHE  480
QITSSWCHVL SRTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	4e-11	61	88	2	29	superman protein
2l1o_A	4e-11	61	88	2	29	Transcriptional regulator SUPERMAN

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL662981	4e-34	AL662981.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence.
GenBank	AP014960	4e-34	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	4e-34	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11852	26	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37740.1	2e-18	zinc-finger protein 10