PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g07380.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 328aa    MW: 36058.2 Da    PI: 10.108
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g07380.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2156.9e-05205225323
                                     ETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                     C+ C+k F r  nL+ H r H
  Zjn_sc00004.1.g07380.1.sm.mkhc 205 CEVCNKGFQREQNLQLHRRGH 225
                                     *******************88 PP
2zf-C2H212.70.0004280302123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     +kC +C+k++  +s+ k H + +
  Zjn_sc00004.1.g07380.1.sm.mkhc 280 WKCDKCSKRYAVQSDWKAHSKIC 302
                                     58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.6E-6202225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.1E-8202225No hitNo description
PROSITE profilePS5015710.97203225IPR007087Zinc finger, C2H2
SMARTSM003550.025203225IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280205225IPR007087Zinc finger, C2H2
SMARTSM0035589245275IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.6E-5268301IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.1E-8275300No hitNo description
SMARTSM00355140280300IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MYSDNPMIKS KKPNNPGKSS CVCVTVRSKP HAVGGRNPQT LHDSALPALL SSTALLSLGR  60
GREEEQHTAA ATRERVRAKG EDEEHCQSRQ QAKGKANEPL LAISPEEVMA SNSSAAFFGI  120
RDGDQQDQIK PLISPQQQLG AALPGLPDAA TAAPGHGAPA AAPPPPKKKR TLPGKSLFLF  180
DSGHPDAEVI ALSPKTLLAT NRFLCEVCNK GFQREQNLQL HRRGHNLPWK LKQKNPLQAQ  240
RRRVYVCPEP TCVHHDPARA LGDLTGIKKH FSRKHGEKKW KCDKCSKRYA VQSDWKAHSK  300
ICGTREYRCD CGTLFSRYAC ILPSTFSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-21276317344Zinc finger protein JACKDAW
5b3h_F3e-21276317344Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041881e-171AP004188.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1493_H11.
GenBankAP0149581e-171AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446943.11e-116protein indeterminate-domain 5, chloroplastic
RefseqXP_021318855.11e-116protein indeterminate-domain 5, chloroplastic
TrEMBLA0A1E5W4N31e-115A0A1E5W4N3_9POAL; Protein indeterminate-domain 4, chloroplastic
STRINGPavir.Gb01057.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-86C2H2-like zinc finger protein