PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00004.1.g05900.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 1298aa MW: 139276 Da PI: 7.1212

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00004.1.g05900.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	96.6	2.3e-30	287	371	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW+++e+laLi++r+em+ ++r++ lk+plWe+vs+k+++ g++rs+k+Ckek+en++k+yk++keg+ +r++++s +++ Zjn_sc00004.1.g05900.1.am.mk 287 RWPREETLALIRIRSEMDATFRDATLKGPLWEDVSRKLADLGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRF 365 8*******************************************************************866665..* PP trihelix 82 fdqlea 87 f++lea Zjn_sc00004.1.g05900.1.am.mk 366 FSELEA 371 ***985 PP
2	trihelix	108.9	3.3e-34	665	750	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW+k ev+aLi++r +m+ r++++ k+plWe++s+ mr+ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpy Zjn_sc00004.1.g05900.1.am.mk 665 RWPKAEVHALIQLRMDMDMRYQETGPKGPLWEDISAGMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPY 744 8*******************************************************************8.99*** PP trihelix 82 fdqlea 87 f+qlea Zjn_sc00004.1.g05900.1.am.mk 745 FHQLEA 750 **85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	3.3E-4	284	346	IPR001005	SANT/Myb domain
CDD	cd12203	1.45E-30	286	351	No hit	No description
Pfam	PF13837	3.1E-21	286	372	No hit	No description
PROSITE profile	PS50090	7.039	286	344	IPR017877	Myb-like domain
PROSITE profile	PS50090	7.34	658	722	IPR017877	Myb-like domain
SMART	SM00717	0.0011	662	724	IPR001005	SANT/Myb domain
CDD	cd12203	4.20E-31	664	729	No hit	No description
Pfam	PF13837	2.3E-23	664	751	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 1298 aa Download sequence Send to blast
MYTAGLLQAL SLTLSLGQAP SHHHQVTSGA RGVFACFFLP SSLALDPFQL STLPPIFFTI 60 SLSLSLSLSL SLSLSLYHPT PSLPRRALRP AGPFPSPTCT SPSFPISSSP SSFHSSPFSL 120 SLLAHTTLSL GASVGGRGGG SWAPGATRPA IQGLAFGCGC YPHAASSSKN RLVAAAGKEK 180 LKFNREEGEL VAAPMQHQPQ HQGSESPYGA APPDMGPFSP PAASSAMPLS SRPPSSSQEQ 240 QQLTPSYEEL TAVSEAGAGA GASFPDDEML GGGSGGGGGS GTPGGNRWPR EETLALIRIR 300 SEMDATFRDA TLKGPLWEDV SRKLADLGYK RSAKKCKEKF ENVHKYYKRT KEGRAGRQDG 360 KSYRFFSELE ALHAAAPQPP ASSAPQMHAF AAPVSAAPPM NPLPPPAAGG PMQPAPISSA 420 APAPFELPPP QPLNLQGLSF SSMSDSESDG ESDDDDMTAE TGGGQEQLGK RKRGGGGKKM 480 MSFFEGLMQQ VVERQEEVQR RFLETMEKRE AERTAREEAW RRQEVARLNR EQDQLAQERA 540 AAASRDATII AFLQRIGGHS VQPPAAVIVP MSAHMTVQTP PPPPKQPPRQ QPTQATPPPK 600 PISASPLQQQ PPQQQYKETS PQNVSTPRGA PPTPGSAASL ELVPTSEQHV DLALGGEGGE 660 ASSSRWPKAE VHALIQLRMD MDMRYQETGP KGPLWEDISA GMRRLGYNRS SKRCKEKWEN 720 INKYYKKVKE SNKKRPEDSK TCPYFHQLEA IYLKKQQSGG TAASSANVVA AATTPAFTSQ 780 LNQSRQEIEG KNINDDKRNN GGSSGGGAQV PPSNGDPAPP LTAALDVDSG TKKPEDIVRE 840 LTERPPREVM TDETDSDDMG DEYTDDGEEG EDDGKMQYRI QFQSPNSGGN NSAPAPAPAP 900 STTTTPPGPA SAPTTTNTFA AMVQPRTTKR PADVADTDDG SGKMGSLGVS RDWIGSEGII 960 SARKVTLPVA HLARLTPGQL TPHMTMRDLL LRDPREGADT HSALQRMIRP SLSNHERSLA 1020 RCLGCLQSSS VMVSAPAPTI IPVGGVVNLT TSSGATNASV CHASTPRGES GVQAAACRVR 1080 TCSQLSTPRR PSPFLSPGCA TIITPPTRGI LMSDYILLHA DAFRGIITNW DSTAARATTG 1140 HNLTVIASLR CPECPFHSTI LFANVPGIDF TDEHPRIVRA VEDLILLRVP FGGSEDEDEY 1200 FIYRAGGEKG SSLRLLPRPA RTTTFCDEDV GRLRRGEEHY TFRDEDVGLL RRGEEHYTVA 1260 ALLPLGKSNV YELHRFDSVT EKWSTDKVPL VEPQFSFP

Sequence ? help Back to Top

Protein Sequence Length: 1298 aa Download sequence Send to blast

MYTAGLLQAL SLTLSLGQAP SHHHQVTSGA RGVFACFFLP SSLALDPFQL STLPPIFFTI  60
SLSLSLSLSL SLSLSLYHPT PSLPRRALRP AGPFPSPTCT SPSFPISSSP SSFHSSPFSL  120
SLLAHTTLSL GASVGGRGGG SWAPGATRPA IQGLAFGCGC YPHAASSSKN RLVAAAGKEK  180
LKFNREEGEL VAAPMQHQPQ HQGSESPYGA APPDMGPFSP PAASSAMPLS SRPPSSSQEQ  240
QQLTPSYEEL TAVSEAGAGA GASFPDDEML GGGSGGGGGS GTPGGNRWPR EETLALIRIR  300
SEMDATFRDA TLKGPLWEDV SRKLADLGYK RSAKKCKEKF ENVHKYYKRT KEGRAGRQDG  360
KSYRFFSELE ALHAAAPQPP ASSAPQMHAF AAPVSAAPPM NPLPPPAAGG PMQPAPISSA  420
APAPFELPPP QPLNLQGLSF SSMSDSESDG ESDDDDMTAE TGGGQEQLGK RKRGGGGKKM  480
MSFFEGLMQQ VVERQEEVQR RFLETMEKRE AERTAREEAW RRQEVARLNR EQDQLAQERA  540
AAASRDATII AFLQRIGGHS VQPPAAVIVP MSAHMTVQTP PPPPKQPPRQ QPTQATPPPK  600
PISASPLQQQ PPQQQYKETS PQNVSTPRGA PPTPGSAASL ELVPTSEQHV DLALGGEGGE  660
ASSSRWPKAE VHALIQLRMD MDMRYQETGP KGPLWEDISA GMRRLGYNRS SKRCKEKWEN  720
INKYYKKVKE SNKKRPEDSK TCPYFHQLEA IYLKKQQSGG TAASSANVVA AATTPAFTSQ  780
LNQSRQEIEG KNINDDKRNN GGSSGGGAQV PPSNGDPAPP LTAALDVDSG TKKPEDIVRE  840
LTERPPREVM TDETDSDDMG DEYTDDGEEG EDDGKMQYRI QFQSPNSGGN NSAPAPAPAP  900
STTTTPPGPA SAPTTTNTFA AMVQPRTTKR PADVADTDDG SGKMGSLGVS RDWIGSEGII  960
SARKVTLPVA HLARLTPGQL TPHMTMRDLL LRDPREGADT HSALQRMIRP SLSNHERSLA  1020
RCLGCLQSSS VMVSAPAPTI IPVGGVVNLT TSSGATNASV CHASTPRGES GVQAAACRVR  1080
TCSQLSTPRR PSPFLSPGCA TIITPPTRGI LMSDYILLHA DAFRGIITNW DSTAARATTG  1140
HNLTVIASLR CPECPFHSTI LFANVPGIDF TDEHPRIVRA VEDLILLRVP FGGSEDEDEY  1200
FIYRAGGEKG SSLRLLPRPA RTTTFCDEDV GRLRRGEEHY TFRDEDVGLL RRGEEHYTVA  1260
ALLPLGKSNV YELHRFDSVT EKWSTDKVPL VEPQFSFP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	329	337	KRSAKKCKE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001344790.1	0.0	uncharacterized LOC100279868 isoform 2
TrEMBL	A0A1D6E4F1	0.0	A0A1D6E4F1_MAIZE; GT-2-like 1
STRING	GRMZM2G016649_P03	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	2e-39	GT-2-like 1