PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00004.1.g04990.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 171aa MW: 18024.5 Da PI: 11.0727 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113 | 4.2e-35 | 20 | 102 | 3 | 87 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssa 82 +k + ++++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++t+eWLl+qa+p+i ++tg+++s+a +c ss s+ Zjn_sc00004.1.g04990.1.am.mk 20 KKPSGSKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTVEWLLRQAEPSILAATGSGTSPAvFSC---SSAPST 97 5667789********************************************************999995444...222222 PP TCP 83 snsss 87 s+ss Zjn_sc00004.1.g04990.1.am.mk 98 SSSSR 102 21111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.3E-31 | 24 | 119 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.73 | 25 | 79 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MSLAALAPTD AAVATAPARK KPSGSKDRHS KVNGRGRRVR MPIVCAARVF QLTRELGLKS 60 DGQTVEWLLR QAEPSILAAT GSGTSPAVFS CSSAPSTSSS SRSLLLGKRP RQDVDEAPPP 120 LWAAMQARPV VVAWGLSTPA QEQAYASEAQ GHRLNLPSVL SGTTKPAEES R |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU967480 | 1e-81 | EU967480.1 Zea mays clone 303582 TCP-domain protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003580173.1 | 5e-63 | transcription factor TCP21 | ||||
Refseq | XP_004976294.1 | 4e-63 | transcription factor PCF1 | ||||
Swissprot | Q9FTA2 | 7e-38 | TCP21_ARATH; Transcription factor TCP21 | ||||
TrEMBL | A0A0A9DEW8 | 2e-80 | A0A0A9DEW8_ARUDO; Uncharacterized protein | ||||
STRING | Traes_2BL_4B6057E06.1 | 4e-66 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08330.1 | 4e-37 | TCP family protein |
Publications ? help Back to Top | |||
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