PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g02460.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 405aa    MW: 43651.4 Da    PI: 7.5226
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g02460.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.5e-13169212447
                                   S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   W+teE+ +++++   +G g+Wk I+r++ k+Rt+ q+ s+ qky
  Zjn_sc00004.1.g02460.1.am.mk 169 WSTEEHRQFLRGLCVYGRGDWKNISRHFVKTRTPVQVSSHAQKY 212
                                   *******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-10159214IPR009057Homeodomain-like
PROSITE profilePS5129415.475161217IPR017930Myb domain
SuperFamilySSF466896.13E-16164218IPR009057Homeodomain-like
SMARTSM007171.6E-9165215IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.8E-11167214IPR006447Myb domain, plants
PfamPF002496.2E-9169212IPR001005SANT/Myb domain
CDDcd001671.16E-8169212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MAMAAANLGP LLNGEWSPSD VAMAKSLIVK HNNSNHANAT SDDDVGAGSL NRKHRSIVDV  60
LHAQFPWKDR HQVTDLYVDV VVEMLQGGPE KMVAAAAGPT AAAAGGVELV NDNFGVVPVA  120
GHPPMENMEA LLAPVNVVEM SRAQRKTAER QPSRHPHASQ PERHRGRFWS TEEHRQFLRG  180
LCVYGRGDWK NISRHFVKTR TPVQVSSHAQ KYYRRLESAA TRQRYSINDV GLYDAEPWAA  240
PTNNSSGWEP LAIAAGGYNS NVYDVARGQQ GSTHPALAFA GGAGNNSNGY LTRGQQGSKQ  300
PTFSFAGGDN SNGYVAHGQQ GYTHQPAPAM NNIIPAPVWS PFQYNAGEVS TSQAAWTTGD  360
FQQMGYAAAA APPPAMEGTG SFVPAGDQQG AFFAPQQWMN NNICY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806560.11e-69transcription factor SRM1-like
TrEMBLA0A2T7E8373e-75A0A2T7E837_9POAL; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.26e-22MYB family protein