PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00003.1.g14950.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 728aa MW: 77768.1 Da PI: 6.9066

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00003.1.g14950.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	98.8	4.7e-31	66	150	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW++qe+laL+++r+em+ ++r+++lk+plWeevs+k+++ g++rspk+C+ek+en+ k+yk++k+g+ +r++++ +++ Zjn_sc00003.1.g14950.1.am.mk 66 RWPRQETLALLKIRSEMDAAFREAALKGPLWEEVSRKLAAMGYNRSPKKCREKFENVDKYYKRTKDGRAGRSDGKA--YRF 144 8*******************************************************************966665..* PP trihelix 82 fdqlea 87 f++lea Zjn_sc00003.1.g14950.1.am.mk 145 FSELEA 150 ***985 PP
2	trihelix	109	3.1e-34	436	521	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW++ ev+aLi++r+e+e r++++ k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+k+++kkr +e+s+tcpy Zjn_sc00003.1.g14950.1.am.mk 436 RWPQAEVHALIQLRTELEARYQDNGPKGPLWEDISAGMRRLGYNRSAKRCKEKWENINKYFKKVKDSNKKR-PEDSKTCPY 515 8*******************************************************************8.99*** PP trihelix 82 fdqlea 87 ++ql+a Zjn_sc00003.1.g14950.1.am.mk 516 YHQLDA 521 **85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.306	59	123	IPR017877	Myb-like domain
SMART	SM00717	0.0012	63	125	IPR001005	SANT/Myb domain
CDD	cd12203	9.66E-30	65	130	No hit	No description
Pfam	PF13837	4.0E-21	65	151	No hit	No description
SMART	SM00717	0.0036	433	495	IPR001005	SANT/Myb domain
CDD	cd12203	1.82E-32	435	500	No hit	No description
PROSITE profile	PS50090	7.155	435	493	IPR017877	Myb-like domain
Pfam	PF13837	4.7E-24	436	522	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.9E-4	436	492	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 728 aa Download sequence Send to blast
MQQQPGMPSF SPTAGAGTTA SQHAQPSEPS GAGGSAPPPA GGSIDHEGGL SAGGDEGDRS 60 GSAGNRWPRQ ETLALLKIRS EMDAAFREAA LKGPLWEEVS RKLAAMGYNR SPKKCREKFE 120 NVDKYYKRTK DGRAGRSDGK AYRFFSELEA LHGASSPHPP PASLAPTPVA MAPPAAFPLG 180 VVPSMAAPAM RRAEPPPSSV VTMTPAAPTA GGVTCMTTAG DVSFSSSSDG EDTDQETGDG 240 GKRKRRDSDR GGGSSKMMRF FEGLMRQVME RQEEMQQRFI EAIERREQDR MIRDEAWRRQ 300 EVARLAREQD ALAQERAMAA TRDAAVVAFI QRITGQTIPM PPPSSLGVSP PTMISQALKP 360 TPVASAAPAP PPQHQHHQTP SPVQPAPKTH TTVPPISTQP QKQHMPQPES KDSIVVRAPA 420 ESQDTMGSGG APSPSRWPQA EVHALIQLRT ELEARYQDNG PKGPLWEDIS AGMRRLGYNR 480 SAKRCKEKWE NINKYFKKVK DSNKKRPEDS KTCPYYHQLD ALYRSKALAS SGAGGAAPHP 540 RPEAVTVLAA VPLSQTAPHQ AVGGGGNKQD CSSVRNGNGC ASSDNGGGMQ TQGSNGGVTP 600 NTISLPVEGG SGNGTSTKKE DNIMMKETPQ PVSMNDSYVN DRMDAGDSDS MDDDEDDFDE 660 DEDEGDVGSG GNNNKTMQYE IQFQRQHQHQ HQSQSQGSVD IRPNASGGAG SGPGPATTSG 720 SFLTMVHH

Sequence ? help Back to Top

Protein Sequence Length: 728 aa Download sequence Send to blast

MQQQPGMPSF SPTAGAGTTA SQHAQPSEPS GAGGSAPPPA GGSIDHEGGL SAGGDEGDRS  60
GSAGNRWPRQ ETLALLKIRS EMDAAFREAA LKGPLWEEVS RKLAAMGYNR SPKKCREKFE  120
NVDKYYKRTK DGRAGRSDGK AYRFFSELEA LHGASSPHPP PASLAPTPVA MAPPAAFPLG  180
VVPSMAAPAM RRAEPPPSSV VTMTPAAPTA GGVTCMTTAG DVSFSSSSDG EDTDQETGDG  240
GKRKRRDSDR GGGSSKMMRF FEGLMRQVME RQEEMQQRFI EAIERREQDR MIRDEAWRRQ  300
EVARLAREQD ALAQERAMAA TRDAAVVAFI QRITGQTIPM PPPSSLGVSP PTMISQALKP  360
TPVASAAPAP PPQHQHHQTP SPVQPAPKTH TTVPPISTQP QKQHMPQPES KDSIVVRAPA  420
ESQDTMGSGG APSPSRWPQA EVHALIQLRT ELEARYQDNG PKGPLWEDIS AGMRRLGYNR  480
SAKRCKEKWE NINKYFKKVK DSNKKRPEDS KTCPYYHQLD ALYRSKALAS SGAGGAAPHP  540
RPEAVTVLAA VPLSQTAPHQ AVGGGGNKQD CSSVRNGNGC ASSDNGGGMQ TQGSNGGVTP  600
NTISLPVEGG SGNGTSTKKE DNIMMKETPQ PVSMNDSYVN DRMDAGDSDS MDDDEDDFDE  660
DEDEGDVGSG GNNNKTMQYE IQFQRQHQHQ HQSQSQGSVD IRPNASGGAG SGPGPATTSG  720
SFLTMVHH

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00244	DAP	Transfer from AT1G76890	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241800	1e-102	AK241800.1 Oryza sativa Japonica Group cDNA, clone: J065208I24, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791925.1	0.0	trihelix transcription factor GTL1-like
TrEMBL	A0A2T7CIN4	0.0	A0A2T7CIN4_9POAL; Uncharacterized protein
STRING	Si034382m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	4e-49	Trihelix family protein