PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00003.1.g14360.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 242aa MW: 27442.6 Da PI: 10.0898 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94 | 6.9e-30 | 31 | 81 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s Zjn_sc00003.1.g14360.1.sm.mkhc 31 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSTRGKLYEFAS 81 79***********************************************86 PP | |||||||
2 | K-box | 50.4 | 9.9e-18 | 100 | 184 | 6 | 90 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 ++++ +++ e+ + +++ L k++e L+ +R+llGe Le++s+ eL++Le +Leksl +R +K + l+e+ +l+k + Zjn_sc00003.1.g14360.1.sm.mkhc 100 TNNTVQQDIEQIKADAEGLAKKLEALEAYKRKLLGERLEECSIDELHSLEVKLEKSLHIVRGRKVRKLKEEEMTLRKNN 178 44467888999******************************************************************** PP K-box 85 kelqee 90 ++l+e+ Zjn_sc00003.1.g14360.1.sm.mkhc 179 EDLREK 184 *99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.819 | 23 | 83 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-39 | 23 | 82 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.36E-33 | 25 | 106 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-31 | 25 | 45 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.89E-42 | 25 | 97 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 25 | 79 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-26 | 32 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-31 | 45 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-31 | 60 | 81 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.9E-17 | 105 | 185 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.487 | 108 | 191 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000060 | Biological Process | protein import into nucleus, translocation | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009838 | Biological Process | abscission | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0080187 | Biological Process | floral organ senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MARALPEKRQ TVRTQPMSCS HNMVRGKTQM KRIENPTSRQ VTFSKRRNGL LKKAFELSVL 60 CDAEVALIVF STRGKLYEFA SASVQKTVER YRTYTKDNVT NNTVQQDIEQ IKADAEGLAK 120 KLEALEAYKR KLLGERLEEC SIDELHSLEV KLEKSLHIVR GRKVRKLKEE EMTLRKNNED 180 LREKCKVQPQ LVAPLGVVAT QDKHPEKAGN DMDVETELFI GLPGRDNRPS KAAIAVGQSS 240 HA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-19 | 23 | 94 | 1 | 72 | MEF2C |
5f28_B | 1e-19 | 23 | 94 | 1 | 72 | MEF2C |
5f28_C | 1e-19 | 23 | 94 | 1 | 72 | MEF2C |
5f28_D | 1e-19 | 23 | 94 | 1 | 72 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00076 | ChIP-chip | Transfer from AT2G45660 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT062798 | 1e-143 | BT062798.1 Zea mays full-length cDNA clone ZM_BFb0347K21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985919.1 | 1e-119 | MADS-box transcription factor 50 isoform X2 | ||||
Refseq | XP_004985920.1 | 1e-119 | MADS-box transcription factor 50 isoform X2 | ||||
Refseq | XP_012698462.1 | 1e-119 | MADS-box transcription factor 50 isoform X2 | ||||
Swissprot | Q9XJ60 | 1e-112 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | A0A1L5YF98 | 1e-113 | A0A1L5YF98_PANVG; SL1 | ||||
TrEMBL | Q9FR85 | 1e-113 | Q9FR85_MAIZE; M5 protein | ||||
STRING | GRMZM2G171365_P01 | 1e-114 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1413 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.3 | 8e-65 | AGAMOUS-like 42 |