PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00003.1.g12380.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 399aa MW: 41970.5 Da PI: 4.6013

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00003.1.g12380.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	368	392	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ykCp C+k ++ s+++rH r++ Zjn_sc00003.1.g12380.1.sm.mkhc 368 YKCPtpGCSKIYKFVSDFVRHTRRC 392 9**********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.42E-6	358	391	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.2E-6	359	390	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MRIRRYAARL LSSSAAATNP GSPPPQPAAA WLHAAEDDCC AFCDLIHSSQ QESPEVVKHK 60 GHIAGRVPES EVKSGEHVDL AEGLPAPEAK NCKIDHGHPF NEADAALGVT NDGSVVNEAV 120 VKLEDARGAD LVTRADVKPT FKAGQPGPFD AEDGTIEQKV KCRSSLVTDA VKPEFIGENS 180 PVNELAAELE VLKGAPLSNK VDFDPEVTER ASLENRTATM PGVTGIEPDD AHGASIMNQS 240 GMELRAIRAA SVVNEASAEP ELKEGVSLIS TTATDAGATI AVPEVTRTGS LGNDGAIGSE 300 VKWGASLVQE AAEREATEDA VASQAAWETE DTGAASCNAD DDPALDDPRP PSCDTTGNVQ 360 VHAGAKPYKC PTPGCSKIYK FVSDFVRHTR RCKPQRLRG

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MRIRRYAARL LSSSAAATNP GSPPPQPAAA WLHAAEDDCC AFCDLIHSSQ QESPEVVKHK  60
GHIAGRVPES EVKSGEHVDL AEGLPAPEAK NCKIDHGHPF NEADAALGVT NDGSVVNEAV  120
VKLEDARGAD LVTRADVKPT FKAGQPGPFD AEDGTIEQKV KCRSSLVTDA VKPEFIGENS  180
PVNELAAELE VLKGAPLSNK VDFDPEVTER ASLENRTATM PGVTGIEPDD AHGASIMNQS  240
GMELRAIRAA SVVNEASAEP ELKEGVSLIS TTATDAGATI AVPEVTRTGS LGNDGAIGSE  300
VKWGASLVQE AAEREATEDA VASQAAWETE DTGAASCNAD DDPALDDPRP PSCDTTGNVQ  360
VHAGAKPYKC PTPGCSKIYK FVSDFVRHTR RCKPQRLRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792345.1	6e-76	uncharacterized protein LOC112873563

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11491	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	9e-08	relative of early flowering 6