PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00003.1.g06800.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bZIP | ||||||||
Protein Properties | Length: 232aa MW: 25726.5 Da PI: 6.9621 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 57.2 | 3.7e-18 | 148 | 203 | 1 | 56 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 e+elk+++rkq+NRe+ArrsR+RK+ae ee +++++ L++eN++Lk+el++l++++ Zjn_sc00003.1.g06800.1.am.mkhc 148 ERELKKQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQEKC 203 89***************************************************998 PP | |||||||
2 | bZIP_1 | 21.4 | 5.3e-07 | 193 | 223 | 25 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 25 kaeieeLeekvkeLeaeNkaLkkeleelkke 55 k+e+++L+ek++ L++eN++L ++l+el++e Zjn_sc00003.1.g06800.1.am.mkhc 193 KEELKQLQEKCDILTSENTSLHEKLKELEDE 223 799**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 2.0E-14 | 4 | 73 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Gene3D | G3DSA:1.20.5.170 | 5.5E-15 | 145 | 206 | No hit | No description |
SMART | SM00338 | 3.3E-19 | 148 | 212 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 8.0E-17 | 148 | 204 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.335 | 150 | 213 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.89E-10 | 151 | 207 | No hit | No description |
CDD | cd14702 | 5.38E-22 | 153 | 204 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 155 | 170 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MVSEQSTSTN PPTVYPDWSQ FQAYYNAAGT APMTPPAFFH SPVAPNPQGH PYMWGPQGSH 60 PYSPYPVQSP KGTVQTPGSR VKDGSERGQS NDAGNKGTGS AVEPLQPSSG PVVLNPMMPF 120 WPVPPPMAGP ATAVNMSGDY WGAPTSDERE LKKQKRKQSN RESARRSRLR KQAEWEEVAN 180 RADLLKQENS SLKEELKQLQ EKCDILTSEN TSLHEKLKEL EDEKSNGNWY KD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 170 | RRSRLRK |
2 | 164 | 171 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066563 | 1e-81 | AK066563.1 Oryza sativa Japonica Group cDNA clone:J013071G08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795520.1 | 7e-85 | bZIP transcription factor 16-like isoform X1 | ||||
Refseq | XP_025795521.1 | 7e-85 | bZIP transcription factor 16-like isoform X1 | ||||
Refseq | XP_025795522.1 | 3e-85 | bZIP transcription factor 16-like isoform X2 | ||||
Swissprot | Q501B2 | 1e-28 | BZP16_ARATH; bZIP transcription factor 16 | ||||
TrEMBL | A0A059Q3D7 | 1e-120 | A0A059Q3D7_9POAL; Transcription factor | ||||
STRING | Pavir.Ia03945.1.p | 9e-84 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11506 | 32 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.2 | 1e-25 | G-box binding factor 1 |
Publications ? help Back to Top | |||
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