PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g05760.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 647aa    MW: 69063 Da    PI: 6.2935
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g05760.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS297.92.6e-912045991373
                          GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdgd......pmqRlaayfteALaarlarsvs..elykalppsetse 71 
                                   l +lL+++Aea+s   ++ ela+ +L rl+e++s +g       +m+Rlaa+ft AL+  l +s +    +k  ++ + ++
  Zjn_sc00003.1.g05760.1.am.mk 204 LLHLLMAAAEALSGphKSRELARVILVRLKEMVSHTGAtnapasNMERLAAHFTDALQGLLDGSHPvgAASKHAATAAPHQ 284
                                   579**********8557777***************9965888889*****************9666213445555666666 PP

                          GRAS  72 knsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgsp 150
                                   ++  ++l+a+++++++sP++kf+h+taNqaIleav+g++rvH++D+di +G+QW++L+qa+ sRp   +pp+lRiT+v ++
  Zjn_sc00003.1.g05760.1.am.mk 285 HHRGDVLTAFQMLQDMSPYMKFGHFTANQAILEAVAGDRRVHVVDYDIAEGVQWASLMQAMISRPdgVPPPHLRITAVLRN 365
                                   6699*************************************************************777799*********8 PP

                          GRAS 151 esgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklv 231
                                     g +++++e+g+rLa fA++++ pf+f     ++ + ++  + r+ +gEal+ n+vl+          ++    ++L  +
  Zjn_sc00003.1.g05760.1.am.mk 366 GGGGARAVQEVGRRLAAFAASIRQPFSFGQCRIDSEDRFRSATVRMVKGEALVANCVLNQAAATTTVRRSTGSVASFLAGM 446
                                   888***************************9999999*********************887776555555557999***** PP

                          GRAS 232 kslsPkvvvvveqe.adhnse..........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                                    +l +k+v+vve++  d ++e           F++rf+e l+ ysa+ dslea++p++s  r  vEr++l+++i  +v+ +
  Zjn_sc00003.1.g05760.1.am.mk 447 ATLGAKLVTVVEEDrGDAEKEddeggdaaagGFVARFMEELHRYSAVCDSLEAGFPTQSWVRGLVERVILAPNIAGAVSRA 527
                                   *************953333335678889999************************************************** PP

                          GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees.gslvlgWkdrpLvsvSaW 373
                                    ++   + e  + W e+++  GF++vpls ++ +qa+lll  ++ dgy++ee s + +vlgWk r+L+s+S+W
  Zjn_sc00003.1.g05760.1.am.mk 528 YRAVDGDGEARGGWGEWMRGNGFRAVPLSCFNHSQARLLLGLFN-DGYTMEETSpNKIVLGWKARRLLSASVW 599
                                   ********************************************.******88626777************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.084178580IPR005202Transcription factor GRAS
PfamPF035149.0E-89204599IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MPSISLIHRA SAVALGSRRR SGSRGLSSIN KPLSCVLPSS AQIPAPSLPT DRSPLSPRAK  60
TFPDSKPKQS HSTRTGINQA STMEVTMDDV AGELEFSGCS STTTSCSHEA WNSLSPVAEW  120
GPFCRDDCGQ DLHGLIEAML CDDTLVGAAV DDDYDSIHPA MFFRDEACYY SNGSVPSSTT  180
TTNPGTPVYD VDAQGDCPEK GLRLLHLLMA AAEALSGPHK SRELARVILV RLKEMVSHTG  240
ATNAPASNME RLAAHFTDAL QGLLDGSHPV GAASKHAATA APHQHHRGDV LTAFQMLQDM  300
SPYMKFGHFT ANQAILEAVA GDRRVHVVDY DIAEGVQWAS LMQAMISRPD GVPPPHLRIT  360
AVLRNGGGGA RAVQEVGRRL AAFAASIRQP FSFGQCRIDS EDRFRSATVR MVKGEALVAN  420
CVLNQAAATT TVRRSTGSVA SFLAGMATLG AKLVTVVEED RGDAEKEDDE GGDAAAGGFV  480
ARFMEELHRY SAVCDSLEAG FPTQSWVRGL VERVILAPNI AGAVSRAYRA VDGDGEARGG  540
WGEWMRGNGF RAVPLSCFNH SQARLLLGLF NDGYTMEETS PNKIVLGWKA RRLLSASVWA  600
PPPMSVPSSP PEGVLQSVVM APVSGGVGRM EFDYIDSFLA EPAYALV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-4821260126379Protein SCARECROW
5b3h_D1e-4821260126379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468140.20.0nodulation-signaling pathway 2 protein
SwissprotQ5NE241e-150NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A1E5V8410.0A0A1E5V841_9POAL; Nodulation-signaling pathway 2 protein
STRINGSb01g040270.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-102GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]