PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g02120.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 207aa    MW: 23002.5 Da    PI: 8.9702
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g02120.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.42.2e-213091259
                                    --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                            WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59
                                    +Dg++WrKYG K++++++fpr YYrCt++   +Cp++k+v+++ ++d+ +  +tY +eH ++
  Zjn_sc00003.1.g02120.1.sm.mkhc 30 NDGHQWRKYGEKKINNTNFPRYYYRCTYKdnmNCPATKQVQQKdSSDTPLYAVTYYNEHSCN 91
                                    8***************************99999*******875167999**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-231691IPR003657WRKY domain
SuperFamilySSF1182902.62E-222291IPR003657WRKY domain
PROSITE profilePS5081116.5132493IPR003657WRKY domain
SMARTSM007742.7E-312992IPR003657WRKY domain
PfamPF031061.5E-243090IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSPAPSSHQP HTNSRKEKRV RQVDTFAPHN DGHQWRKYGE KKINNTNFPR YYYRCTYKDN  60
MNCPATKQVQ QKDSSDTPLY AVTYYNEHSC NSAYLSLSPS EFQLQTSSGK AISICFDSSA  120
APQEPVASAC SPSSSAATPA AMRRGTPPET KRPPAPVLRR SETYPWGAGA VEQRPPASCG  180
TERHGAAVPE EVVDAGRFGE IRFFHFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-131789275Disease resistance protein RRS1
5w3x_D1e-131789275Disease resistance protein RRS1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586231e-136KU058623.1 UNVERIFIED: Panicum miliaceum WRKY6-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792602.11e-111probable WRKY transcription factor 35
TrEMBLA0A3L6SG441e-110A0A3L6SG44_PANMI; Putative WRKY transcription factor 35
STRINGPavir.Ib01500.1.p1e-109(Panicum virgatum)
STRINGSi039519m1e-109(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.15e-17WRKY family protein