PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00002.1.g14300.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 168aa MW: 17982.5 Da PI: 7.6642

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00002.1.g14300.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	27	49	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C+ F++ L H++ H Zjn_sc00002.1.g14300.1.sm.mk 27 HECPICKHGFTTAQALGGHMNIH 49 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.38E-6	25	54	No hit	No description
Pfam	PF13912	4.2E-7	26	50	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.951	27	54	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	29	49	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MERGSSSRRS SRATDDAAPT GGRRPYHECP ICKHGFTTAQ ALGGHMNIHR RDRATRRPGR 60 DAPANGTAPA AYTEYPPAPA IGGSSSSSFA TYYSGPAYAA ADTTNYGSTS ASQTELNLFG 120 AAATYDHADL SLGVGPRASE EWERPDGDAE RNLDLELRLG RRPGWGWH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805746.1	5e-24	uncharacterized protein LOC112884551
TrEMBL	A0A1E5WER2	3e-24	A0A1E5WER2_9POAL; Uncharacterized protein
STRING	Pavir.J09457.1.p	4e-29	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8111	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	5e-08	C2H2 family protein