PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g10495.1.br
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 349aa    MW: 38793.9 Da    PI: 8.989
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g10495.1.brgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.77.5e-1297188199
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                                ffk l     ++++ l+lp kfa   g    ++ t++l +e     W+v+l    ++++++l++GW++ ++  +L eg  +vF+
  Zjn_sc00002.1.g10495.1.br  97 FFKLL--LPGMAKNELRLPAKFAGVLGDR--RDLTVRLSSEGAmPLWDVEL--VTSGDGVYLGRGWRQLARTYDLGEGHLLVFR 174
                                77888..66778888********666655..777999999655599*****..999999************************* PP

                                E-SSSEE..EEEEE-S CS
                         B3  84 ldgrsefelvvkvfrk 99 
                                +d+   + l+v+vf+ 
  Zjn_sc00002.1.g10495.1.br 175 YDN--AAVLNVTVFDP 188
                                975..66679999985 PP
2B344.62.5e-14228306887
                                -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                         B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                                 ++ +++ l +p +f ++hg+  ++  +++l+   grsW+v+l+   r  ++r+ ++ GW +F+ +ngL++gD++ F+++++
  Zjn_sc00002.1.g10495.1.br 228 LSTKQNQYLNVPVEFQDAHGYARRR--QVVLR-MGGRSWTVNLKRgkRPFGDRTAFKYGWHQFCVDNGLEVGDTCFFHVVHE 306
                                5677888999*********999666..45554.59********6644444555*************************8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.15E-1195187No hitNo description
PROSITE profilePS5086311.67495189IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.5E-1796191IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-1796191IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.5E-1097189IPR003340B3 DNA binding domain
PfamPF023629.0E-997187IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-22218306IPR015300DNA-binding pseudobarrel domain
CDDcd100173.07E-13219302No hitNo description
SuperFamilySSF1019365.49E-16219306IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.8E-4219313IPR003340B3 DNA binding domain
PROSITE profilePS5086311.716221318IPR003340B3 DNA binding domain
PfamPF023627.1E-12229307IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MFRTIRCAHA SSTDHQQISL GKLRSSPSLQ VLGGGLVHRD LPCSVRSVKT PFKHRFNSQE  60
HSSISHLPIS APGLSLSARG AAMEQGIADL PKAEFEFFKL LLPGMAKNEL RLPAKFAGVL  120
GDRRDLTVRL SSEGAMPLWD VELVTSGDGV YLGRGWRQLA RTYDLGEGHL LVFRYDNAAV  180
LNVTVFDPST CRKQYPRAGG AGSAGAGRNA PHVNEPAPFA VTLRNCNLST KQNQYLNVPV  240
EFQDAHGYAR RRQVVLRMGG RSWTVNLKRG KRPFGDRTAF KYGWHQFCVD NGLEVGDTCF  300
FHVVHERKAL KEEEEDDDDD VKEERVKEEE DDGHALKVVV RKKDGAFVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796563.12e-99B3 domain-containing protein Os03g0212300-like
RefseqXP_025796564.12e-99B3 domain-containing protein Os03g0212300-like
SwissprotQ10Q262e-79Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A0A9SID01e-115A0A0A9SID0_ARUDO; Uncharacterized protein
STRINGPavir.Ia04671.1.p7e-98(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-20B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]