PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00002.1.g07090.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 448aa MW: 47900.6 Da PI: 8.9415 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 197 | 220 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg++ r+ +L+ H+ + H Zjn_sc00002.1.g07090.1.sm.mk 197 FPCKVCGEVLGRPQQLELHQAMkH 220 89******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.767 | 197 | 225 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 199 | 220 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 7.29E-12 | 222 | 434 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 5.0E-9 | 223 | 435 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MAAVGGSRSS LLRGFLSLFF LLFVHIGHAS CCFSLGPAAR QREDDDSTET GADGIVGARG 60 ASKRRKMSPL AFSPAASSSA VAEERVRRRN VSSLVTSLRV YLHRIFSTGT KNGAVAAREE 120 EEVVTTTVSS PQAQSLAPQP SASLVLSTPS SPCSSSSFTS PISSRSLGVT PVPSSLQKLL 180 QAGRQSSRSF AARGDLFPCK VCGEVLGRPQ QLELHQAMKH SLSELSDLDS SMNIIRMIFL 240 AGWKPAGDAP AVRRVLRIHH HPRALARFEE YRDLVRARAA RRCAEGAAVE ERCIADGNER 300 LRFHCSTMLC PSLGSAGGAC GSPYCCVCST LRHGFAGKQA DVDGVATYAS AWAAHASLPE 360 DVEREFAFLQ VRRAMLVCRV VAGRVGRGAA DDKVAYDSIV PVRAGGVGGD DDDAELLVFN 420 PRAVLPCFVI IYSSQQSVAT RRPACKQY |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036884 | 0.0 | BT036884.1 Zea mays full-length cDNA clone ZM_BFb0145P22 mRNA, complete cds. | |||
GenBank | BT066435 | 0.0 | BT066435.1 Zea mays full-length cDNA clone ZM_BFc0163N15 mRNA, complete cds. | |||
GenBank | BT084542 | 0.0 | BT084542.1 Zea mays full-length cDNA clone ZM_BFb0129H01 mRNA, complete cds. | |||
GenBank | EU954611 | 0.0 | EU954611.1 Zea mays clone 1473866 nucleic acid binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021313429.1 | 0.0 | uncharacterized protein LOC8054291 | ||||
TrEMBL | A0A0A9L721 | 0.0 | A0A0A9L721_ARUDO; Uncharacterized protein | ||||
STRING | Sb01g040170.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10517 | 30 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29660.1 | 4e-41 | C2H2 family protein |