PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00001.1.g12270.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 95aa    MW: 9917.94 Da    PI: 8.7391
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00001.1.g12270.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-052749123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C+ C++ F++   L  H++ H
  Zjn_sc00001.1.g12270.1.am.mk 27 YECSFCKRGFTNAQALGGHMNIH 49
                                  99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.2E-62651IPR007087Zinc finger, C2H2
SuperFamilySSF576674.17E-72653No hitNo description
SMARTSM003550.0092749IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-42753IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.3232754IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MEGGQNKAGS PEASGEGSKR TPAAAYYECS FCKRGFTNAQ ALGGHMNIHR KDRGSKSGTA  60
PPTPPGGSGE VRLGLSLGRS EDVDLELRLG SHPYN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9479765e-39EU947976.1 Zea mays clone 368057 mRNA sequence.
GenBankEU9751795e-39EU975179.1 Zea mays clone 483468 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959168.12e-49probable transcriptional regulator RABBIT EARS
TrEMBLA0A1E5VXJ52e-48A0A1E5VXJ5_9POAL; Uncharacterized protein
STRINGSi032478m9e-49(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63633244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-15C2H2 family protein