PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00001.1.g09470.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family FAR1
Protein Properties Length: 405aa    MW: 44051.5 Da    PI: 9.1104
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00001.1.g09470.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.12.9e-2374173190
                            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvk 69 
                                     +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e+kk+          ++ +  + + +rtgC a+l++k
  Zjn_sc00001.1.g09470.1.sm.mkhc  74 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQESKKSqdesgagggtSSPAPPRCPDSRTGCLASLTIK 151
                                     6*****************99997666.******************998888888886666666889************* PP

                            FAR1  70 kek.dgkwevtkleleHnHela 90 
                                     +    + +++t+++ eHnH+la
  Zjn_sc00001.1.g09470.1.sm.mkhc 152 LIPsANAFRITDFVAEHNHPLA 173
                                     **9999**************97 PP
2FAR170.63.7e-22221320290
                            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklk 67 
                                     fYn+YA+++GFsvr+s++k++   g i++r fvCs+eg +++ k++             + + r   + trtgC+a+++
  Zjn_sc00001.1.g09470.1.sm.mkhc 221 FYNRYAEHIGFSVRRSYKKRK--RGVIVSRIFVCSREGVSDRAKQEgvvaisangaagsAGTPRPGPPPTRTGCQARMV 297
                                     9*************9976665..999****************9999********999876777778899********** PP

                            FAR1  68 vkkekdgkwevtkleleHnHela 90 
                                     +k +   +++v+k+ +eHnH+la
  Zjn_sc00001.1.g09470.1.sm.mkhc 298 IKITPCRTYRVAKFFSEHNHPLA 320
                                     *********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.3E-2074173IPR004330FAR1 DNA binding domain
PfamPF031015.1E-19221320IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MSAAPDPSHL SGDSSPSSPS SYGSSSPSSF GAADPAATNL AQEASASAAG DEADASPTSP  60
HVGMYFETED DAYEFYKAYA ARLGFVVRKS NKSKNSRHTV TRRLFVCSKQ GFRQESKKSQ  120
DESGAGGGTS SPAPPRCPDS RTGCLASLTI KLIPSANAFR ITDFVAEHNH PLASAAPAVS  180
LALLPPSSSR HSIAAAASLP DPKDGPHPDM HFETEEDAYV FYNRYAEHIG FSVRRSYKKR  240
KRGVIVSRIF VCSREGVSDR AKQEGVVAIS ANGAAGSAGT PRPGPPPTRT GCQARMVIKI  300
TPCRTYRVAK FFSEHNHPLA NPDSVHKLRR YEAILDEHRS KKLHADVDGS QVTLIWEIML  360
FLQAVKQFLL EETNILNIQH KQEEFLRQQM MKLQGVFDLT AMRMG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804639.11e-176protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025804640.11e-176protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2T7EWC71e-176A0A2T7EWC7_9POAL; Uncharacterized protein
STRINGPavir.Ba00914.1.p1e-179(Panicum virgatum)
STRINGPavir.J10702.1.p1e-180(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.24e-14FAR1 family protein