PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00001.1.g05070.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 221aa MW: 22944 Da PI: 8.9669 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0012 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgk++ + L H +H Zjn_sc00001.1.g05070.1.am.mk 83 YECSVCGKVYASYQALGGHKTSH 105 99********9999998887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 5.2E-13 | 83 | 107 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.04 | 83 | 105 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.034 | 83 | 110 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.63E-8 | 83 | 105 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.63E-8 | 135 | 162 | No hit | No description |
Pfam | PF13912 | 5.8E-10 | 140 | 164 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.9 | 140 | 162 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.891 | 140 | 162 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 142 | 162 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MALDYALDVS SKPPASPPRV DSWGSGGRRS KRRAGSADAV VGPQSEDEYL ALCLLMLSRG 60 VRGDDDSPAT RSVGAAKASN QGYECSVCGK VYASYQALGG HKTSHRKPPT PPRPQPPALA 120 PSEVPPSSGG GAAPAEEKLH QCGLCLRTFP SGQALGGHKR LHYEGDGVKA KDPTAKGRPV 180 AASVLRDFDL NIPVAAATAI GDEAGEIAPP EAKRARMLLM V |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460947.1 | 2e-60 | zinc finger protein 1 | ||||
TrEMBL | A0A3L6T8Z9 | 7e-65 | A0A3L6T8Z9_PANMI; Zinc finger protein 1-like | ||||
STRING | Pavir.J16973.1.p | 1e-61 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10028 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 1e-24 | C2H2 family protein |